fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G65210 TGA1 bZIP transcription factor family protein (.1.2.3.4.5.6)

>AT5G65210.5 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, PvuII, SalI, SmaI, SpeI
Name Recognition sequence Cut positions
EcoRI G|AATTC 3, 906
EcoRV GAT|ATC 550
HindIII A|AGCTT 224, 929
NcoI C|CATGG 186
SacI GAGCT|C 1068
StyI C|C[AT][AT]GG 186
XbaI T|CTAGA 235, 768
XhoI C|TCGAG 1019


Click here to view TAIR data

>AT5G65210.5 length:1107
ATGAATTCGA CATCGACACA TTTTGTGCCA CCGAGAAGAG TTGGTATATA 
50
CGAACCTGTC CATCAATTCG GTATGTGGGG GGAGAGTTTC AAAAGCAATA 
100
TTAGCAATGG GACTATGAAC ACACCAAACC ACATAATAAT ACCGAATAAT 
150
CAGAAACTAG ACAACAACGT GTCAGAGGAT ACTTCCCATG GAACAGCAGG 
200
AACTCCTCAC ATGTTCGATC AAGAAGCTTC AACGTCTAGA CATCCCGATA 
250
AGATACAAAG ACGGCTTGCT CAAAACCGCG AGGCTGCTAG GAAAAGTCGC 
300
TTGCGCAAGA AGGCTTATGT TCAGCAACTG GAAACAAGCA GGTTGAAGCT 
350
AATTCAATTA GAGCAAGAAC TCGATCGTGC TAGACAACAG GGATTCTATG 
400
TAGGAAACGG AATAGATACT AATTCTCTCG GTTTTTCGGA AACCATGAAT 
450
CCAGGGATTG CTGCATTTGA AATGGAATAT GGACATTGGG TTGAAGAACA 
500
GAACAGACAG ATATGTGAAC TAAGAACAGT TTTACACGGA CACATTAACG 
550
ATATCGAGCT TCGTTCGCTA GTCGAAAACG CCATGAAACA TTACTTTGAG 
600
CTTTTCCGGA TGAAATCGTC TGCTGCCAAA GCCGATGTCT TCTTCGTCAT 
650
GTCAGGGATG TGGAGAACTT CAGCAGAACG ATTCTTCTTA TGGATTGGCG 
700
GATTTCGACC CTCCGATCTT CTCAAGGTTC TTTTGCCACA TTTTGATGTC 
750
TTGACGGATC AACAACTTCT AGATGTATGC AATCTAAAAC AATCGTGTCA 
800
GCAAGCAGAA GACGCGTTGA CTCAAGGTAT GGAGAAGCTG CAACACACCC 
850
TTGCGGACTG CGTTGCAGCG GGACAACTCG GTGAAGGAAG TTACATTCCT 
900
CAGGTGAATT CTGCTATGGA TAGATTAGAA GCTTTGGTCA GTTTCGTAAA 
950
TCAGGCTGAT CACTTGAGAC ATGAAACATT GCAACAAATG TATCGGATAT 
1000
TGACAACGCG ACAAGCGGCT CGAGGATTAT TAGCTCTTGG TGAGTATTTT 
1050
CAACGGCTTA GAGCCTTGAG CTCAAGTTGG GCAACTCGAC ATCGTGAACC 
1100
AACGTAG
1150

>AT5G65210.5 longest ORF length:368
MNSTSTHFVP PRRVGIYEPV HQFGMWGESF KSNISNGTMN TPNHIIIPNN 
50
QKLDNNVSED TSHGTAGTPH MFDQEASTSR HPDKIQRRLA QNREAARKSR 
100
LRKKAYVQQL ETSRLKLIQL EQELDRARQQ GFYVGNGIDT NSLGFSETMN 
150
PGIAAFEMEY GHWVEEQNRQ ICELRTVLHG HINDIELRSL VENAMKHYFE 
200
LFRMKSSAAK ADVFFVMSGM WRTSAERFFL WIGGFRPSDL LKVLLPHFDV 
250
LTDQQLLDVC NLKQSCQQAE DALTQGMEKL QHTLADCVAA GQLGEGSYIP 
300
QVNSAMDRLE ALVSFVNQAD HLRHETLQQM YRILTTRQAA RGLLALGEYF 
350
QRLRALSSSW ATRHREPT
400