fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G66770 GRAS family transcription factor (.1)

>AT5G66770.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRV, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SmaI, SpeI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 486
EcoRI G|AATTC 1532
HindIII A|AGCTT 701
NcoI C|CATGG 142
SalI G|TCGAC 464, 1216
StyI C|C[AT][AT]GG 142, 1139
XbaI T|CTAGA 930


Click here to view TAIR data

>AT5G66770.1 length:1755
ATGGCTTACA TGTGCACTGA TAGTGGCAAT CTAATGGCTA TTGCTCAACA 
50
AGTCATCAAA CAGAAGCAGC AACAAGAACA ACAACAGCAG CAACATCATC 
100
AAGACCATCA GATTTTTGGT ATTAATCCTT TGTCTCTTAA CCCATGGCCC 
150
AATACTTCCC TCGGGTTTGG GCTTTCAGGT TCGGCTTTTC CCGACCCGTT 
200
TCAAGTTACC GGCGGCGGAG ATTCCAACGA TCCTGGCTTT CCTTTTCCTA 
250
ACTTAGACCA CCACCACGCC ACAACCACCG GCGGTGGGTT CAGGTTATCT 
300
GATTTCGGCG GTGGAACCGG CGGCGGCGAG TTTGAGTCCG ACGAGTGGAT 
350
GGAGACTCTT ATCAGCGGTG GAGACTCCGT TGCAGACGGT CCTGATTGTG 
400
ACACCTGGCA TGATAATCCC GATTACGTAA TCTACGGTCC TGATCCATTC 
450
GATACTTACC CGAGTCGACT CAGTGTCCAA CCGTCAGATC TAAACCGAGT 
500
CATTGACACG TCGAGTCCGC TTCCTCCGCC GACCTTGTGG CCTCCTTCTT 
550
CGCCATTATC GATTCCTCCG CTTACTCATG AGTCACCAAC CAAAGAAGAT 
600
CCAGAGACTA ACGACTCCGA AGACGATGAC TTCGACCTAG AACCACCTCT 
650
CCTCAAAGCT ATATACGACT GTGCACGGAT CTCAGACTCT GACCCTAACG 
700
AAGCTTCCAA GACGCTTCTT CAGATCCGAG AATCTGTATC GGAGCTAGGT 
750
GATCCGACGG AGCGAGTTGC ATTTTACTTC ACGGAAGCTC TCTCCAACAG 
800
ACTGTCTCCT AATTCGCCGG CGACGTCGTC TTCTTCTTCA TCTACGGAGG 
850
ATTTAATCTT ATCTTATAAA ACCCTAAACG ACGCTTGTCC TTACTCCAAA 
900
TTCGCACATT TGACGGCGAA TCAAGCGATT CTAGAAGCGA CGGAGAAGTC 
950
GAACAAGATT CACATCGTCG ATTTTGGAAT CGTTCAAGGT ATACAATGGC 
1000
CTGCTCTTCT TCAAGCTCTA GCTACTCGTA CTTCTGGTAA ACCCACTCAA 
1050
ATCCGGGTCT CGGGTATACC CGCTCCATCT CTCGGTGAAT CTCCGGAACC 
1100
GTCGTTAATC GCCACCGGAA ACCGCCTCCG TGATTTCGCC AAGGTTCTGG 
1150
ATCTGAATTT CGATTTCATC CCAATTCTCA CTCCCATACA TTTACTTAAC 
1200
GGGTCAAGTT TCCGGGTCGA CCCGGATGAA GTACTGGCCG TGAATTTCAT 
1250
GCTCCAGCTC TACAAATTAC TCGACGAGAC GCCGACGATA GTTGACACCG 
1300
CACTACGGCT CGCCAAATCG TTGAACCCGA GGGTCGTCAC TCTCGGAGAA 
1350
TACGAAGTGA GCTTAAACCG GGTCGGTTTC GCTAACCGGG TAAAGAACGC 
1400
GCTTCAATTC TATTCCGCGG TTTTCGAATC CCTTGAACCG AACTTGGGGC 
1450
GTGATTCGGA GGAGAGAGTG AGAGTTGAGC GAGAGTTGTT CGGCCGGAGA 
1500
ATCTCGGGTT TGATTGGACC GGAGAAAACC GGAATTCATA GAGAAAGAAT 
1550
GGAAGAGAAA GAGCAATGGC GGGTATTAAT GGAGAATGCC GGTTTTGAAT 
1600
CGGTTAAGCT GAGTAATTAC GCAGTGAGCC AAGCGAAGAT TCTATTGTGG 
1650
AATTACAATT ACAGCAATTT GTATTCAATT GTTGAATCTA AGCCTGGCTT 
1700
CATCTCTTTG GCCTGGAACG ATTTACCTCT CCTCACTCTT TCTTCCTGGC 
1750
GATAA
1800

>AT5G66770.1 longest ORF length:584
MAYMCTDSGN LMAIAQQVIK QKQQQEQQQQ QHHQDHQIFG INPLSLNPWP 
50
NTSLGFGLSG SAFPDPFQVT GGGDSNDPGF PFPNLDHHHA TTTGGGFRLS 
100
DFGGGTGGGE FESDEWMETL ISGGDSVADG PDCDTWHDNP DYVIYGPDPF 
150
DTYPSRLSVQ PSDLNRVIDT SSPLPPPTLW PPSSPLSIPP LTHESPTKED 
200
PETNDSEDDD FDLEPPLLKA IYDCARISDS DPNEASKTLL QIRESVSELG 
250
DPTERVAFYF TEALSNRLSP NSPATSSSSS STEDLILSYK TLNDACPYSK 
300
FAHLTANQAI LEATEKSNKI HIVDFGIVQG IQWPALLQAL ATRTSGKPTQ 
350
IRVSGIPAPS LGESPEPSLI ATGNRLRDFA KVLDLNFDFI PILTPIHLLN 
400
GSSFRVDPDE VLAVNFMLQL YKLLDETPTI VDTALRLAKS LNPRVVTLGE 
450
YEVSLNRVGF ANRVKNALQF YSAVFESLEP NLGRDSEERV RVERELFGRR 
500
ISGLIGPEKT GIHRERMEEK EQWRVLMENA GFESVKLSNY AVSQAKILLW 
550
NYNYSNLYSI VESKPGFISL AWNDLPLLTL SSWR
600