|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT5G67000 | Integrase-type DNA-binding superfamily protein (.1) |
>AT5G67000.1 CDS map
>>Show genomic map
Uncut enzymes: AatII, Acc65I, AccI, AfeI, AflII, AgeI, AlwI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvaII, AvrII, BaeI, BalI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BfaI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaI, BsaJI, BsaXI, BseRI, BsgI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrGI, BsrI, BssHII, BssKI, BssSI, BstAPI, BstBI, BstEII, BstF5I, BstNI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, ClaI, DraI, DraIII, DrdI, EarI, EciI, EcoNI, EcoO109I, EcoRI, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HincII, HindIII, HinfI, HpaI, HphI, HpyCH4III, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MlyI, MnlI, MscI, MspA1I, N.BstNBI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, SbfI, ScaI, ScrFI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TfiI, TliI, Tsp45I, TspRI, Tth111I, XbaI, XhoI, XmaI
| Name | Recognition sequence | Cut positions |
| AccII(FnuDII) | CG|CG | 226 |
| AccIII(BspMII) | T|CCGGA | 214 |
| AciI | C|CGC | 260, 329 |
| AclI | AA|CGTT | 444 |
| AflIII | A|CPuPyGT | 227 |
| AhdI | GACNNN|NNGTC | 228 |
| AluI | AG|CT | 217 |
| AlwNI | CAGNNN|CTG | 272 |
| ApoI | Pu|AATTPy | 114 |
| BamHI | G|GATCC | 411 |
| BclI | T|GATCA | 102, 245 |
| BsaBI | GATNN|NNATC | 423 |
| BsaHI | GPu|CGPyC | 295 |
| BsaWI | [AT]|CCGG[AT] | 214 |
| BsiEI | CGPuPy|CG | 328 |
| BsiHKAI | G[AT]GC[AT]|C | 169 |
| BslI | CCNNNNN|NNGG | 32, 273, 291 |
| Bsp1286I | G[GAT]GC[CAT]|C | 169 |
| BspEI | T|CCGGA | 214 |
| BsrFI | Pu|CCGGPy | 301 |
| BstUI | CG|CG | 226 |
| BstXI | CCANNNNN|NTGG | 71 |
| BstYI | Pu|GATCPy | 411 |
| Cac8I | GCN|NGC | 274 |
| Cfr10I | [AG]|CCGG[TC] | 301 |
| DdeI | C|TNAG | 493 |
| DpnI | GA-CH3|TC | 101, 161, 175, 244, 410, 417 |
| DpnII | |GATC | 101, 161, 175, 244, 410, 417 |
| EaeI | Py|GGCCPu | 328 |
| EagI | C|GGCCG | 328 |
| EcoRV | GAT|ATC | 204 |
| Fnu4HI | GC|NGC | 313, 329, 396, 465, 486 |
| HaeIII | GG|CC | 275, 327 |
| HpaII | C|CGG | 213, 300 |
| Hpy188I | TCN|GA | 81, 413 |
| Hpy99I | CG[AT]CG| | 224, 296 |
| HpyCH4IV | A|CGT | 443, 508 |
| HpyCH4V | TG|CA | 30, 127, 314 |
| MboI | |GATC | 101, 161, 175, 244, 410, 417 |
| MluI | A|CGCGT | 227 |
| MseI | T|TAA | 96, 534 |
| MslI | CAPyNN|NNPuTG | 70 |
| MspI | C|CGG | 213, 300 |
| MwoI | GCNNNNN|NNGC | 225, 313, 462 |
| NlaIII | CATG| | 178 |
| NlaIV | GGN|NCC | 411 |
| PflMI | CCANNNN|NTGG | 273 |
| RsaI | GT|AC | 148 |
| Sau3AI | |GATC | 101, 161, 175, 244, 410, 417 |
| Sau96I | G|GNCC | 276 |
| Taqƒ¿I | T|CGA | 419, 499 |
| TseI | G|C[AT]GC | 313 |
| Tsp509I | |AATT | 77, 113, 532 |
| XcmI | CCANNNNN|NNNNTGG | 391 |
| XmnI | GAANN|NNTTC | 89 |
Click here to view TAIR data
>AT5G67000.1 length:555
ATGCTCACTC CCTTTTGTTC TTCACACCAT TTGCAGGAAA AAATGAATAG | 50 |
TTGTCAGTCT AATCCCACCA AAATGGATAA TTCAGAAAAT GTTCTATTTA | 100 |
ATGATCAAAA CGAAAATTTC ACACTTGTTG CACCACACCC TTCTTCTTCG | 150 |
TACTTGACAA GAGATCAAGA GCACGAGATC ATGGTCTCTG CTCTGCGACA | 200 |
AGTGATATCT AACTCCGGAG CTGACGACGC GTCATCATCA AACTTGATCA | 250 |
TCACAAGCGT TCCGCCTCCA GACGCTGGCC CTTGTCCTCT CTGTGGCGTC | 300 |
GCCGGTTGCT ACGGCTGCAC ATTACAACGG CCGCACCGAG AGGTAAAGAA | 350 |
GGAGAAGAAA TACAAAGGAG TAAGGAAAAA ACCATCGGGT AAATGGGCGG | 400 |
CGGAGATATG GGATCCGAGA TCGAAATCAA GGAGGTGGCT TGGAACGTTT | 450 |
CTTACGGCGG AGATGGCGGC ACAATCTTAC AATGATGCGG CGGCTGAGTA | 500 |
TCGAGCAAGA CGTGGTAAAA CAAACGGAGA AGGAATTAAA CGGCGGTGGA | 550 |
GATGA | 600 |
>AT5G67000.1 longest ORF length:184
MLTPFCSSHH LQEKMNSCQS NPTKMDNSEN VLFNDQNENF TLVAPHPSSS | 50 |
YLTRDQEHEI MVSALRQVIS NSGADDASSS NLIITSVPPP DAGPCPLCGV | 100 |
AGCYGCTLQR PHREVKKEKK YKGVRKKPSG KWAAEIWDPR SKSRRWLGTF | 150 |
LTAEMAAQSY NDAAAEYRAR RGKTNGEGIK RRWR | 200 |