fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G67180 TOE3 target of early activation tagged (EAT) 3 (.1)

>AT5G67180.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccII(FnuDII), AccIII(BspMII), AclI, AfeI, AflII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AvrII, BaeI, BalI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BlpI, BmrI, BpmI, BsaBI, BsaHI, BsaI, BsaJI, BsaXI, BseRI, BsgI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, Bsp1286I, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrFI, BsrGI, BssHII, BssSI, BstBI, BstUI, BstXI, Bsu36I, BtgI, BtrI, BtsI, Cfr10I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, FauI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HhaI, HinP1I, HindIII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MspA1I, NaeI, , NarI, NcoI, NdeI, NgoMIV, NotI, NruI, PI-PspI, PI-SceI(VDE), PacI, PciI, PflMI, PleI, PmeI, PpuMI, PsiI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SapI, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, XbaI, XcmI, XmaI, XmnI
Name Recognition sequence Cut positions
AccI GT|[AC][TG]AC 215, 742
AciI C|CGC 239, 1021
AflIII A|CPuPyGT 66
AluI AG|CT 278, 667, 676, 764
ApoI Pu|AATTPy 129, 421, 492
AseI AT|TAAT 445
AvaI C|PyCGPuG 395
AvaII G|G[AT]CC 169, 264
BamHI G|GATCC 198
BfaI C|TAG 672, 806, 908
BglII A|GATCT 759
BsaAI PyAC|GTPu 67, 275
BsaWI [AT]|CCGG[AT] 57, 117, 172, 316
BsiEI CGPuPy|CG 59
BslI CCNNNNN|NNGG 322
BsoBI C|PyCGPuG 395
BsrBI GAG|CGG 410
BsrDI GCAATGNN| 915
BsrI ACTGGN| 538
BssKI |CCNGG 124, 156
BstAPI GCANNNN|NTGC 387
BstEII G|GTNACC 121
BstF5I GGATGNN| 81
BstNI CC|[AT]GG 124
BstYI Pu|GATCPy 198, 759
BstZ17I GTA|TAC 742
Cac8I GCN|NGC 853, 909
DdeI C|TNAG 283, 362, 522, 762, 767, 801
DpnI GA-CH3|TC 23, 197, 207, 404, 758, 899, 933
DpnII |GATC 23, 197, 207, 404, 758, 899, 933
EcoRV GAT|ATC 234
Fnu4HI GC|NGC 387, 411, 669, 690, 944, 984
HincII GTPy|PuAC 215
HinfI G|ANTC 15, 36, 53, 83, 327, 600, 813, 835, 997
HpaII C|CGG 56, 116, 137, 155, 171, 227, 315
Hpy188I TCN|GA 39, 61, 195, 424, 768, 822, 843, 931, 936, 951
Hpy99I CG[AT]CG| 258, 309, 775, 922
HpyCH4III ACN|GT 43, 104, 343, 784, 927, 955
HpyCH4IV A|CGT 66, 95, 259, 274, 299, 604, 633
HpyCH4V TG|CA 91, 379, 436, 513, 579, 850
MboI |GATC 23, 197, 207, 404, 758, 899, 933
MseI T|TAA 9, 417, 444
MslI CAPyNN|NNPuTG 587
MspI C|CGG 56, 116, 137, 155, 171, 227, 315
MwoI GCNNNNN|NNGC 277, 387, 675, 1030
N.BstNBI GAGTCNNNN|N 88, 332, 605
NciI CC|[CG]GG 156
NheI G|CTAGC 909
NlaIII CATG| 148, 383, 515
NlaIV GGN|NCC 5, 153, 198
NsiI ATGCA|T 514
NspI PuCATG|Py 384, 516
PaeR7I C|TCGAG 395
PflFI GACN|NNGTC 263
PmlI CAC|GTG 67
PshAI GACNN|NNGTC 69, 840, 928
PspGI |CC[AT]GG 124
RsaI GT|AC 358, 518, 631
SalI G|TCGAC 215
Sau3AI |GATC 23, 197, 207, 404, 758, 899, 933
Sau96I G|GNCC 169, 264
ScrFI CC|NGG 124, 156
SmlI C|TPyPuAG 395, 838
Taqƒ¿I T|CGA 214, 289, 394, 406, 450, 967
TfiI G|A[AT]TC 36, 53, 813, 997
TliI C|TCGAG 395
TseI G|C[AT]GC 387, 669, 944, 984
Tsp45I |GT[CG]AC 120, 329, 602
Tsp509I |AATT 128, 420, 446, 491, 615, 725
TspRI NNCA[CG]TGNN| 379, 538
Tth111I GACN|NNGTC 263
XhoI C|TCGAG 395


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>AT5G67180.1 length:1059
ATGTGGAACC TTAACGACTC ACCCGATCAT CACGAAGAAT CCGACAGTAG 
50
AGGGAATCCG GTCGGACACG TGTCAAACGG GATGAGTCAA TCTGCAACGT 
100
GGCTACCGTT TGTGCTTCCG GTGACCAGGA ATTTCTTTCC GGCTCAAAGC 
150
ATGGAACCGG GAGTTCGTTG GTCCGGTTTC AATAGTGTCG GTAAGTCGGA 
200
TCCAAGCGGA TCGGGTCGAC CAGAAGAGCC GGAGATATCA CCGCCGATAA 
250
AGAAGAGCCG ACGTGGTCCT CGCTCACGTA GCTCTCAGTA TCGAGGAGTT 
300
ACGTTTTACC GACGAACCGG AAGATGGGAG TCACATATTT GGGACTGTGG 
350
GAAGCAAGTG TACTTAGGTG GATTTGACAC TGCACATGCT GCTGCTCGAG 
400
CCTATGATCG AGCGGCGATT AAATTCAGAG GTGTAGATGC AGATATTAAT 
450
TTCGACATTG AAGACTACCT TGACGATTTG AAACAGATGG GAAATTTGAC 
500
AAAGGAAGAG TTTATGCATG TACTTAGAAG GCAAAGCACT GGGTTTCCAA 
550
GAGGCAGTTC TAAATACAGA GGTGTTACTT TGCACAAATG TGGAAGATGG 
600
GAGTCACGTT TGGGTCAATT CCTCAACAAA AAGTACGTTT ATTTGGGTCT 
650
CTTTGATACC GAGATTGAAG CTGCTAGAGC TTATGATAAA GCGGCAATAA 
700
AGTGTAATGG GAAAGACGCT GTTACCAATT TTGACCCTAA AGTATACGAG 
750
GAAGAAGAAG ATCTTAGCTC AGAGACGACG AGGAACGGTC ATAATCTTGG 
800
TCTAAGTCTA GGAGAATCAT CATCTGAAGA GTTTAGACTC AAGTCTGATA 
850
TTGCAAGCAT AAGAAGTAGG ATTAGAGATG AGGAGAGATT ATTAGGGAGC 
900
GATCTATCGC TAGCAATGAT GACGACGACT GTCAGATCGG AAAAGCAGCA 
950
ATCGGACGGT GGAGGAAATC GAGTGGTGGG AATGGCAGCA TCATCAGGAT 
1000
TCTCTCCTCA ACCTTCCCCT TACCGCATTC CTCGCACCTT CCACTTCTCT 
1050
CGTCCCTGA
1100

>AT5G67180.1 longest ORF length:352
MWNLNDSPDH HEESDSRGNP VGHVSNGMSQ SATWLPFVLP VTRNFFPAQS 
50
MEPGVRWSGF NSVGKSDPSG SGRPEEPEIS PPIKKSRRGP RSRSSQYRGV 
100
TFYRRTGRWE SHIWDCGKQV YLGGFDTAHA AARAYDRAAI KFRGVDADIN 
150
FDIEDYLDDL KQMGNLTKEE FMHVLRRQST GFPRGSSKYR GVTLHKCGRW 
200
ESRLGQFLNK KYVYLGLFDT EIEAARAYDK AAIKCNGKDA VTNFDPKVYE 
250
EEEDLSSETT RNGHNLGLSL GESSSEEFRL KSDIASIRSR IRDEERLLGS 
300
DLSLAMMTTT VRSEKQQSDG GGNRVVGMAA SSGFSPQPSP YRIPRTFHFS 
350
RP
400