fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G67420 ASL39, LBD37 ASYMMETRIC LEAVES2-LIKE 39, LOB domain-containing protein 37 (.1)

>AT5G67420.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccI, AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvaII, AvrII, BaeI, BalI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BlpI, BmrI, BpmI, BsaAI, BsaHI, BsaI, BsaJI, BsaXI, BseRI, BsgI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, Bsp1286I, BspDI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrFI, BsrGI, BssHII, BssSI, BstBI, BstEII, BstF5I, BstNI, BstXI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cfr10I, ClaI, DraI, DraIII, DrdI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, N.BstNBI, NaeI, , NarI, NcoI, NdeI, NgoMIV, NheI, NlaIV, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuII, RsrII, SacI, SacII, SalI, SapI, Sau96I, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TliI, Tth111I, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AccII(FnuDII) CG|CG 305
AccIII(BspMII) T|CCGGA 26, 165
AciI C|CGC 81, 156
AluI AG|CT 2, 208, 333, 473, 555
ApoI Pu|AATTPy 121
BfaI C|TAG 477, 483
BglII A|GATCT 398, 481, 487
BsaBI GATNN|NNATC 486, 531
BsaWI [AT]|CCGG[AT] 26, 165
BsiEI CGPuPy|CG 129, 441
BslI CCNNNNN|NNGG 237
BspEI T|CCGGA 26, 165
BsrDI GCAATGNN| 10
BsrI ACTGGN| 262, 269
BssKI |CCNGG 329, 655
BstAPI GCANNNN|NTGC 13
BstUI CG|CG 305
BstYI Pu|GATCPy 398, 481, 487
Cac8I GCN|NGC 361, 594
DdeI C|TNAG 394, 644
DpnI GA-CH3|TC 325, 397, 440, 480, 486, 560, 621
DpnII |GATC 325, 397, 440, 480, 486, 560, 621
EaeI Py|GGCCPu 58, 129
EagI C|GGCCG 129
Fnu4HI GC|NGC 4, 37, 285, 307, 349, 617
HaeIII GG|CC 57, 95, 128
HincII GTPy|PuAC 235
HindIII A|AGCTT 209
HinfI G|ANTC 168, 416, 432, 466, 498, 651
HpaI GTT|AAC 235
HpaII C|CGG 25, 55, 164, 329, 654
Hpy188I TCN|GA 247, 381, 393, 509, 534, 552, 645
Hpy99I CG[AT]CG| 113, 511, 634, 661, 673
HpyCH4III ACN|GT 105, 222, 297, 632, 703
HpyCH4IV A|CGT 175, 517
HpyCH4V TG|CA 5, 35, 401
MboI |GATC 325, 397, 440, 480, 486, 560, 621
MseI T|TAA 234, 317, 588, 735, 748
MslI CAPyNN|NNPuTG 409
MspA1I C[AC]G|C[GT]G 158
MspI C|CGG 25, 55, 164, 329, 654
MwoI GCNNNNN|NNGC 13
NciI CC|[CG]GG 329, 655
NlaIII CATG| 60, 142
PvuI CGAT|CG 441
RsaI GT|AC 700
Sau3AI |GATC 325, 397, 440, 480, 486, 560, 621
ScrFI CC|NGG 329, 655
SmlI C|TPyPuAG 92, 471
Taqƒ¿I T|CGA 635
TfiI G|A[AT]TC 168, 416, 432, 466, 498
TseI G|C[AT]GC 4, 37
Tsp45I |GT[CG]AC 685
Tsp509I |AATT 44, 120, 578
TspRI NNCA[CG]TGNN| 300
XbaI T|CTAGA 478, 484
XcmI CCANNNNN|NNNNTGG 70


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>AT5G67420.1 length:753
ATGAGCTGCA ATGGTTGCCG TGTTCTCCGG AAAGGTTGCA GCGAGAATTG 
50
TATCCTCCGG CCATGTATTC AATGGATTGA AACCGCCGAT GCTCAAGGCC 
100
ACGCCACCGT CTTCGTCGCT AAATTCTTCG GCCGTGCTGG TCTCATGTCC 
150
TTTATCTCCG CTGTTCCGGA TTCTCAACGT CCTGCTTTGT TTCAGTCGTT 
200
GCTCTACGAA GCTTGTGGAA GAACTGTCAA TCCAGTTAAC GGAGCAATCG 
250
GAATGTTATG GACTGGAAAC TGGAATATCT GTCAAGCGGC TGTTGAAACA 
300
GTGCTTCGCG GCGGTTCTTT AAGACCGATC CCGGAGCTTC TCACTCACGG 
350
CGGCGGTTTC GCTGGCTTTC CTTCGCCTAC ATCTGAAGAA GCATCTGAGA 
400
TCTGCACCGA AATGTTGAAT CTCCAGCAAA ATGATTCCAC CGATCGTAAC 
450
ATCTATCATC ATTCACGATT CTCAAGCTCT AGATCTAGAT CTACTATGGA 
500
TTCTTCTTCT CCGACGAAAC GTAAGAGATT ATCATCGGAA GACCAACCAT 
550
CTTCGGAGCT TGATCTATCT CTCATCCCTA ATTTTCCCAT TAAGCAAGCA 
600
ACACCTTCTT CTACACGGCG GCGATCAGTA ACACCGTCGA TGAACTCAGA 
650
GGACTCCGGG ACGACGACGA CTACGACGGC GTTTTGTGAC AAGGGTGATG 
700
TGTACGGTAA CGGAGGAGGA GAAACGACCA AGTTGCTTAA CCTTTTTGTT 
750
TAA
800

>AT5G67420.1 longest ORF length:250
MSCNGCRVLR KGCSENCILR PCIQWIETAD AQGHATVFVA KFFGRAGLMS 
50
FISAVPDSQR PALFQSLLYE ACGRTVNPVN GAIGMLWTGN WNICQAAVET 
100
VLRGGSLRPI PELLTHGGGF AGFPSPTSEE ASEICTEMLN LQQNDSTDRN 
150
IYHHSRFSSS RSRSTMDSSS PTKRKRLSSE DQPSSELDLS LIPNFPIKQA 
200
TPSSTRRRSV TPSMNSEDSG TTTTTTAFCD KGDVYGNGGG ETTKLLNLFV 
250