fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G66470 (AtRHD6, RHD6, bHLH083)

Alias AtRHD6, RHD6, bHLH083
TF Classification
FioreDBbHLH (Click to show phylogenetic tree)
RARTFbHLH / LONG HYPOCOTYL IN FAR-RED1
AtTFDBbHLH
PlnTFDBbHLH (v3.0), bHLH (v1.0)
DATFbHLH
TAIR short description ROOT HAIR DEFECTIVE6 (.1)
TAIR annotation ROOT HAIR DEFECTIVE6 (RHD6); CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: RHD SIX-LIKE 1 (TAIR:AT5G37800.1); Has 2452 Blast hits to 2438 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 23; Fungi - 2; Plants - 2416; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT1G66470.1 6
Entry clone (w/o stop) IE_03A07
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 1046: nucleic acid binding ->core promoter sequence-specific DNA binding
(F) 1228: transcription factor activity ->transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 46983: protein binding ->protein dimerization activity
(P) 48766: developmental processes ->root hair initiation
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(C) 5739: mitochondria ->mitochondrion
(P) 6366: transcription,DNA-dependent ->transcription from RNA polymerase II promoter
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar
soybean
rice 1 1
sorghum 1 1
physcomitrella 1 1
Total 3 3
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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