Alias |
ATRSL1, bHLH086 |
TF Classification |
FioreDB | bHLH (Click to show phylogenetic tree) |
RARTF | bHLH / TRANSPARENT TESTA8 |
AtTFDB | bHLH |
PlnTFDB | bHLH (v3.0), bHLH (v1.0) |
DATF | bHLH |
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TAIR short description |
ARABIDOPSIS THALIANA RHD SIX-LIKE 1, RHD SIX-LIKE 1 (.1) |
TAIR annotation |
RHD SIX-LIKE 1 (RSL1); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: ROOT HAIR DEFECTIVE6 (TAIR:AT1G66470.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). (.1) |
Gene model |
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Entry clone (w/o stop) |
IE_03C11_x |
External link |
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Gene Ontology (GO) |
(F) 1046: nucleic acid binding |
->core promoter sequence-specific DNA binding |
(F) 1228: transcription factor activity |
->transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding |
(F) 3677: DNA or RNA binding |
->DNA binding |
(F) 3700: transcription factor activity |
->transcription factor activity, sequence-specific DNA binding |
(F) 46983: protein binding |
->protein dimerization activity |
(C) 5634: nucleus |
->nucleus |
(P) 6355: transcription,DNA-dependent |
->regulation of transcription, DNA-templated |
(P) 6366: transcription,DNA-dependent |
->transcription from RNA polymerase II promoter |
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miRNA/tasiRNA |
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Orthologs |
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Type |
Ia |
Ib |
II |
III |
Total |
poplar |
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1 |
|
|
1 |
soybean |
|
1 |
|
|
1 |
rice |
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sorghum |
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physcomitrella |
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Total |
|
2 |
|
|
2 |
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Repression motif |
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Repression motif in putative orthologs |
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Status |
Plasmid construction | -> done |
Plasmid construction | -> done |
Transformed | -> done |
T1 seed harvested | -> done |
T2 seed harvested | -> not_yet |
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CRES-T phenotype from individual project
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CRES-T phenotype from publication |
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CRES-T phenotype from bulk project |
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Phenotype in ornamental plants
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Comment |
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