fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G07540 (TRFL2)

Alias TRFL2
TF Classification
FioreDBMYB (Click to show phylogenetic tree)
RARTF
AtTFDB
PlnTFDBMYB-related (v3.0), MYB-related (v1.0)
DATF
TAIR short description TRF-like 2 (.1)
TAIR annotation Arabidopsis thaliana telomere-binding protein, putative (At1g07540) (.1)
Gene model
Gene model cDNA support
AT1G07540.1 1
Entry clone (w/o stop)
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 31627: DNA or RNA metabolism ->telomeric loop formation
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3691: DNA or RNA binding ->double-stranded telomeric DNA binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
(C) 783: other intracellular components ->nuclear telomere cap complex
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1
soybean 1 1
rice 1 1
sorghum 1 1
physcomitrella 1 1
Total 5 5
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
LVTENGLNLGLASALA at 130/682 in poplar Pt022110 (Type Ib)
GSKGIGLGLGLEECGT at 50/193 in physcomitrella Pp034047 (Type Ib)

        

       

       

        Status
        
         

          
Plasmid construction -> not_yet

          
Plasmid construction -> not_yet

          
Transformed -> not_yet

          
T1 seed harvested -> not_yet

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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