fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G19850 (IAA24, ARF5, MP)

Alias IAA24, ARF5, MP
TF Classification
FioreDBARF (Click to show phylogenetic tree)
RARTFARF / MONOPTEROS/ARF5
AtTFDBARF
PlnTFDBARF (v3.0), ARF (v1.0)
DATFARF
TAIR short description MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1)
TAIR annotation Encodes a transcription factor (IAA24) mediating embryo axis formation and vascular development. Similar to AUXIN RESPONSIVE FACTOR 1 (ARF1) shown to bind to auxin responsive elements (AREs), and to the maize transcriptional activator VIVIPAROUS 1( VP1). In situ hybridization shows expression in provascular tissue of embryos, the emerging shoot primordia, then is restricted to provascular tissue, and in the root central vascular cylinder. (.1)
Gene model
Gene model cDNA support
AT1G19850.1 79
Entry clone (w/o stop) IE_05C05
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10051: developmental processes ->xylem and phloem pattern formation
(P) 10305: developmental processes ->leaf vascular tissue pattern formation
(C) 16020: other membranes ->membrane
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 42802: protein binding ->identical protein binding
(F) 44212: nucleic acid binding ->transcription regulatory region DNA binding
(P) 48364: developmental processes ->root development
(P) 48507: other biological processes ->meristem development
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(P) 9733: other biological processes ->response to auxin
(P) 9734: signal transduction ->auxin-activated signaling pathway
(P) 9790: developmental processes ->embryo development
(P) 9908: developmental processes ->flower development
(P) 9942: developmental processes ->longitudinal axis specification
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2
soybean 1 1 2
rice
sorghum
physcomitrella
Total 2 2 4
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        filamental floral stems (with no leaves and flowers). Seedling phenotypes are normal, but the vascular pattern may be abnormal.

         fused stem (direct input), 
         abnormal phyllotaxis (direct input), 
         abnormal leaf (direct input), 
         sterile or low fertility (direct input), 
         abnormal flower (direct input)
        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        
         hyponastic leaf, 
         rough surface leaf 
         (A20299-180)
         

         
         
         

         hyponastic leaf 
         (A20524-312)
         

         hyponastic leaf, 
         rough surface leaf 
         (A20684-35)
         


        		
       

       

        Phenotype in ornamental plants


        
         

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