fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G21200

Alias
TF Classification
FioreDBTrihelix (Click to show phylogenetic tree)
RARTFTrihelix
AtTFDB
PlnTFDB
DATFTrihelix
TAIR short description sequence-specific DNA binding transcription factors (.1)
TAIR annotation sequence-specific DNA binding transcription factors; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76870.1); Has 317 Blast hits to 297 proteins in 56 species: Archae - 2; Bacteria - 28; Metazoa - 67; Fungi - 2; Plants - 135; Viruses - 9; Other Eukaryotes - 74 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT1G21200.1 16
Entry clone (w/o stop) IE_0071
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2
soybean 1 2 3
rice 1 1
sorghum 1 1
physcomitrella
Total 2 2 3 7
Repression motif 
LALQRSLQLALRSRDD at 256/443 in AT1G21200.1
Repression motif
in putative orthologs		 
PALQRSLQLALRNRDD at 259/445 in soybean Gm054925 (Type II)
PALQRSLQLALRSRDD at 262/420 in poplar Pt039865 (Type Ia)
PALQRSLQLALRSRDD at 262/412 in poplar Pt001187 (Type II)
PALQRSLQLALKSKDE at 260/557 in sorghum Sb031456 (Type Ib)
PALQRSLQLALRCKDE at 248/432 in rice Os040210 (Type Ib)
EVRHKELELELKQKGS at 418/432 in rice Os040210 (Type Ib)
PALQRSLQLALRNRDD at 261/444 in soybean Gm028530 (Type Ia)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
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