fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G30330 (ARF6)

Alias ARF6
TF Classification
FioreDBARF (Click to show phylogenetic tree)
RARTFARF / NPH4/ARF7
AtTFDBARF
PlnTFDBARF (v3.0), ARF (v1.0)
DATFARF
TAIR short description auxin response factor 6 (.1.2)
TAIR annotation Encodes a member of the auxin response factor family. Mediates auxin response via expression of auxin regulated genes. Acts redundantly with ARF8 to control stamen elongation and flower maturation. Expression of ARF6 is controlled by miR167. (.1.2)
Gene model
Gene model cDNA support
AT1G30330.2 56
AT1G30330.1 56
Entry clone (w/o stop)
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(P) 9733: other biological processes ->response to auxin
(P) 9734: signal transduction ->auxin-activated signaling pathway
(P) 9908: developmental processes ->flower development
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR167a: 3'-ATCTAGTACGACCGTCGAAGT-5'
5'--3'

miR167b: 3'-ATCTAGTACGACCGTCGAAGT-5'
5'--3'

miR167c: 3'-TGTTCTAGTACGACCGTCGAAT-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 5 6
soybean 4 10 14
rice 1 2 2 5
sorghum 1 1 1 3
physcomitrella 1 1
Total 2 1 8 18 29
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> The work interrupted(07Feb)

          
Plasmid construction -> The work interrupted(07Feb)

          
Transformed -> not_yet

          
T1 seed harvested -> not_yet

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

          Comment