fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G30460 (CPSF30, ATCPSF30)

Alias CPSF30, ATCPSF30
TF Classification
FioreDBC3HZnF (Click to show phylogenetic tree)
RARTFC3H-type 1(Zn) / putative zinc finger protein
AtTFDB
PlnTFDBC3H (v3.0), C3H (v1.0)
DATFC3H
TAIR short description ARABIDOPSIS THALIANA CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 30, cleavage and polyadenylation specificity factor 30 (.1.2)
TAIR annotation Encodes AtCPSF30, the 30-KDa subunit of cleavage and polyadenylation specificity factor. AtCPSF30 is a probable processing endonuclease. Nucleus-localized RNA binding protein capable of interacting with itself and with calmodulin. Its RNA-binding activity is inhibited by calmodulin in a calcium-dependent fashion. (.1), Encodes AtCPSF30, the 30-KDa subunit of cleavage and polyadenylation specificity factor. AtCPSF30 is a probable processing endonuclease. Nucleus-localized RNA binding protein capable of interacting with itself and with calmodulin. Its RNA-binding activity is inhibited by calmodulin in a calcium-dependent fashion. (.2)
Gene model
Gene model cDNA support
AT1G30460.1 9
AT1G30460.2 1
Entry clone (w/o stop)
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 1900363: other metabolic processes ->regulation of mRNA polyadenylation
(P) 2000031: other cellular processes ->regulation of salicylic acid mediated signaling pathway
(P) 31124: other metabolic processes ->mRNA 3-end processing
(P) 34052: other cellular processes ->positive regulation of plant-type hypersensitive response
(F) 3676: nucleic acid binding ->nucleic acid binding
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3723: DNA or RNA binding ->RNA binding
(F) 3729: DNA or RNA binding ->mRNA binding
(P) 43068: other cellular processes ->positive regulation of programmed cell death
(F) 4519: hydrolase activity ->endonuclease activity
(F) 4521: other enzyme activity ->endoribonuclease activity
(F) 46872: other binding ->metal ion binding
(F) 5515: protein binding ->protein binding
(F) 5516: protein binding ->calmodulin binding
(C) 5634: nucleus ->nucleus
(C) 5737: other cytoplasmic components ->cytoplasm
(C) 5847: other intracellular components ->mRNA cleavage and polyadenylation specificity factor complex
(P) 6378: other metabolic processes ->mRNA polyadenylation
(P) 6396: other cellular processes ->RNA processing
(P) 6979: response to stress ->response to oxidative stress
(P) 9626: other cellular processes ->plant-type hypersensitive response
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1
soybean 1 1 2
rice 1 1
sorghum 1 1
physcomitrella 1 1
Total 5 1 6
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> not_yet

          
Plasmid construction -> not_yet

          
Transformed -> not_yet

          
T1 seed harvested -> not_yet

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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