fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G46480 (WOX4)

Alias WOX4
TF Classification
FioreDBHD (Click to show phylogenetic tree)
RARTFHB / WUSCHEL
AtTFDBHomeobox / WOX
PlnTFDBHB (v3.0), HB (v1.0)
DATFHB
TAIR short description WUSCHEL related homeobox 4 (.1)
TAIR annotation Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box. This protein also contains an acidic domain approximately 10 residues upstream of the WUS box. Part of the TDIF-TDR-WOX4 signaling pathway that plays a crucial role in the maintenance of the vascular meristem organization during secondary growth. (.1)
Gene model
Gene model cDNA support
AT1G46480.1 11
Entry clone (w/o stop) RE_01G07
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10067: developmental processes ->procambium histogenesis
(P) 1944: developmental processes ->vasculature development
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 51301: other cellular processes ->cell division
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(P) 7165: signal transduction ->signal transduction
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2
soybean 1 5 6
rice 1 1
sorghum 1 1
physcomitrella
Total 2 2 6 10
Repression motif 
IIDNVTLELFPLHPEG at 239/251 in AT1G46480.1
Repression motif
in putative orthologs		 
QEEHRTLELFPLHPEG at 219/230 in soybean Gm014041 (Type Ia)
EKGDRTLELFPLHPEG at 202/213 in poplar Pt039396 (Type II)
QEEHRTLELFPLHPEG at 213/224 in soybean Gm008857 (Type II)
EEGDRTLELFPLHPEG at 202/213 in poplar Pt017356 (Type Ia)
YTDDVTLELFPLRPQG at 232/245 in sorghum Sb014735 (Type Ib)
CTDEVTLELFPLHP at 224/232 in rice Os019243 (Type Ib)
EEEHRTLELFPLHPEG at 230/246 in soybean Gm047993 (Type II)
EEEHRTLELFPLHPEG at 220/231 in soybean Gm039397 (Type II)
EEEHRTLELFPLHPEG at 220/231 in soybean Gm039396 (Type II)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
View all photo 		Žq—tFƒKƒ‰ƒX‰»‚µ•ªŒú‚­‚¢‚Ñ‚Â(25/54), æ‚Æ‚ª‚èE×’·(6/54), –{—tF‚Ö‚çŒ`‚ŏã•Î¶’·‹­E—ΔZ(16/43), ‰ÔF‘å‚«‚­‚ÄŠJ‚«‘å(23/43), ‚³‚âF•s–«(7/43), ‰ºŒü‚«(6/43), ‰ÔŒsFL’·’x‰„(7/43), ”P‚¶‹È‚ª‚è(6/43), (phenotype_A20102:leaf_‚â‚≩F/flower_‚â‚â‘å‚«‚¢/silique_•s–«/stem_”w‚/ƒƒ[ƒbƒg‘å)(phenotype_A20108:leaf_phenotype—“ŽQÆ/flower_‘å‚«‚­‚ÄŠJ‚«‚à‘å/silique_•s–«/stem_L’·‹É’[‚É’x‚¢/‰ÔŒs”P‚¶‹È‚ª‚è‚Å‚³‚â)
abnormal stem (A20108), dark green leaf (direct input, A20108), abnormal flower (direct input, A20102, A20108), sterile or low fertility (A20102, A20108), tall height (A20102), pale green leaf (A20102), thickened cotyledon (direct input), asynmetric cotyledon (direct input), late flowering (A20108), abnormal shaped leaf (direct input, A20108), too large leaf (A20102)
and more...
CRES-T phenotype from publication
CRES-T phenotype from bulk project bushy (A20980-87)
dark green leaf (A20980-108)
Phenotype in ornamental plants
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