fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G55580 (SCL18, LAS)

Alias SCL18, LAS
TF Classification
FioreDBGRAS (Click to show phylogenetic tree)
RARTFGRAS / SCARECROW
AtTFDBGRAS
PlnTFDBGRAS (v3.0), GRAS (v1.0)
DATFGRAS
TAIR short description SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1)
TAIR annotation Encodes a member of the GRAS family of putative transcriptional regulators. It is involved in the initiation of axillary meristems during both the vegetative and reproductive growth phases and functions upstream of REV and AXR1 in the regulation of shoot branching. (.1)
Gene model
Gene model cDNA support
AT1G55580.1 9
Entry clone (w/o stop) IE_07G07
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10223: developmental processes ->secondary shoot formation
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(P) 90506: developmental processes ->axillary shoot meristem initiation
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 2 3
soybean
rice 1 1
sorghum 1 1
physcomitrella 1 1
Total 1 3 2 6
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
HQFIRALSLRLNGHGI at 85/435 in poplar Pt023858 (Type Ia)
YQFVRALSLRLDRHGI at 83/434 in poplar Pt026998 (Type II)
HQFVRALSLRLNRHAN at 79/438 in poplar Pt031109 (Type II)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        very short pedicel and internode

         short pedicel (direct input), 
         short internode (direct input)
        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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