Alias |
AtRHD6, RHD6, bHLH083 |
TF Classification |
FioreDB | bHLH (Click to show phylogenetic tree) |
RARTF | bHLH / LONG HYPOCOTYL IN FAR-RED1 |
AtTFDB | bHLH |
PlnTFDB | bHLH (v3.0), bHLH (v1.0) |
DATF | bHLH |
|
TAIR short description |
ROOT HAIR DEFECTIVE6 (.1) |
TAIR annotation |
ROOT HAIR DEFECTIVE6 (RHD6); CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: RHD SIX-LIKE 1 (TAIR:AT5G37800.1); Has 2452 Blast hits to 2438 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 23; Fungi - 2; Plants - 2416; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). (.1) |
Gene model |
|
Entry clone (w/o stop) |
IE_03A07 |
External link |
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Gene Ontology (GO) |
(F) 1046: nucleic acid binding |
->core promoter sequence-specific DNA binding |
(F) 1228: transcription factor activity |
->transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding |
(F) 3677: DNA or RNA binding |
->DNA binding |
(F) 3700: transcription factor activity |
->transcription factor activity, sequence-specific DNA binding |
(F) 46983: protein binding |
->protein dimerization activity |
(P) 48766: developmental processes |
->root hair initiation |
(F) 5515: protein binding |
->protein binding |
(C) 5634: nucleus |
->nucleus |
(C) 5739: mitochondria |
->mitochondrion |
(P) 6366: transcription,DNA-dependent |
->transcription from RNA polymerase II promoter |
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miRNA/tasiRNA |
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Orthologs |
|
Type |
Ia |
Ib |
II |
III |
Total |
poplar |
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soybean |
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|
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rice |
|
1 |
|
|
1 |
sorghum |
|
1 |
|
|
1 |
physcomitrella |
|
1 |
|
|
1 |
Total |
|
3 |
|
|
3 |
|
Repression motif |
|
Repression motif in putative orthologs |
|
Status |
Plasmid construction | -> done |
Plasmid construction | -> done |
Transformed | -> done |
T1 seed harvested | -> done |
T2 seed harvested | -> done |
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CRES-T phenotype from individual project
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CRES-T phenotype from publication |
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CRES-T phenotype from bulk project |
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Phenotype in ornamental plants
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Comment |
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