fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G67100 (LBD40)

Alias LBD40
TF Classification
FioreDBAS2 (Click to show phylogenetic tree)
RARTF
AtTFDB
PlnTFDBLOB (v3.0)
DATFAS2
TAIR short description LOB domain-containing protein 40 (.1)
TAIR annotation LOB domain-containing protein 40 (LBD40); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 41 (TAIR:AT3G02550.1); Has 635 Blast hits to 634 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 635; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT1G67100.1 22
Entry clone (w/o stop) IE_0046
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 9739: other biological processes ->response to gibberellin
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 7 8
soybean 2 6 8
rice 1 1 2
sorghum 1 2 1 4
physcomitrella
Total 2 5 15 22
Repression motif
PKTWIGLELTLGLEPL at 185/233 in AT1G67100.1
Repression motif
in putative orthologs
SNGISGLELGLDLTLG at 250/296 in poplar Pt000765 (Type III)
DGSDVRLDLTLGLVSE at 234/244 in poplar Pt042067 (Type III)
QSDDSDLSLELTLALV at 229/241 in poplar Pt034504 (Type III)
PAEGSDLDLDLTLGHY at 263/273 in poplar Pt023502 (Type III)
EVHDAGLDLTLGLPPP at 256/307 in rice Os000273 (Type Ia)
SGNEIGLELTLGFEPV at 239/288 in soybean Gm035214 (Type III)
LQAQPNLDLRLTPVFS at 177/227 in soybean Gm011992 (Type III)
SNGISGLELGLDLTLG at 187/233 in poplar Pt000766 (Type II)
RTDDVGLELTLGFEPV at 301/345 in soybean Gm023557 (Type II)
QPPPMGLDLTLGLLTS at 304/407 in sorghum Sb033188 (Type II)
QEQQPNLDLRLTPVFL at 180/230 in soybean Gm047285 (Type III)
RNEIAGLGLDLALGLE at 174/221 in poplar Pt019114 (Type III)
GGVEMDLDLTLG at 147/153 in soybean Gm022586 (Type III)
KVQHNDLDLGLTPSFS at 178/238 in poplar Pt037620 (Type III)
DGEEMELQLTLGWGPL at 219/232 in soybean Gm017937 (Type III)
RVRKIKLDLELTLGFR at 203/224 in soybean Gm054385 (Type II)
RAAEDGLDLTLGLPLA at 261/297 in sorghum Sb007439 (Type Ia)
SGNEIGLELTLGFEPV at 244/293 in soybean Gm051216 (Type III)
EEEEVGLELTLGFEPV at 292/429 in sorghum Sb032897 (Type III)
ASSLIGLRLQLPAAGE at 325/429 in sorghum Sb032897 (Type III)

        
Status
Plasmid construction -> The work interrupted(05Jul)
Plasmid construction -> The work interrupted(05Jul)
Transformed -> not_yet
T1 seed harvested -> not_yet
T2 seed harvested -> not_yet
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants

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