fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
>>AT1G67310
Alias
TF Classification
FioreDB
CAMTA
(Click to show phylogenetic tree)
RARTF
AtTFDB
PlnTFDB
CAMTA
(v3.0), CAMTA (v1.0)
DATF
CAMTA
TAIR short description
Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1)
TAIR annotation
Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains; FUNCTIONS IN: calmodulin binding, transcription regulator activity; INVOLVED IN: regulation of transcription; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin E-set (InterPro:IPR014756), Ankyrin repeat-containing domain (InterPro:IPR020683), CG-1 (InterPro:IPR005559), Cell surface receptor IPT/TIG (InterPro:IPR002909), Ankyrin repeat (InterPro:IPR002110), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: signal responsive 1 (TAIR:AT2G22300.2); Has 4214 Blast hits to 2978 proteins in 268 species: Archae - 9; Bacteria - 179; Metazoa - 1855; Fungi - 220; Plants - 413; Viruses - 4; Other Eukaryotes - 1534 (source: NCBI BLink). (.1)
Gene model
Gene model
cDNA support
AT1G67310.1
8
Entry clone (w/o stop)
External link
General info
TAIR DATA
Genomic seq
TAIR seq viewer
SNP
SALK SNP Viewer
T-DNA tag line
T-DNA Express
miRNA
Search ASRP
Phylogeny
SALAD database
Promoter
ppdb
Microarray data
FioreDB
ATTED-II
ATTED-II data
NCBI GEO
NCBI GEO profile
NASC
NASCarray_SpotHistory
NASCarray_DigitalNorthern
Genevestigator
Genevestigator
eFP Browser
Developmental Map
Abiotic Stress
AtGenExpress
Development
Hormone
Abiotic Stress
Light
Pathogen
Gene Ontology (GO)
(F) 5516: protein binding
->calmodulin binding
(C) 5634: nucleus
->nucleus
(C) 5829: cytosol
->cytosol
(P) 6355: other metabolic processes
->regulation of transcription, DNA-templated
miRNA/tasiRNA
Orthologs
Type
Ia
Ib
II
III
Total
poplar
1
1
2
soybean
1
1
2
rice
1
1
sorghum
1
1
physcomitrella
Total
2
2
2
6
Repression motif
Repression motif
in putative orthologs
SPDEL
LLLFR
FVQML at 527/998 in poplar
Pt029454
(Type Ia)
Status
Plasmid construction
-> not_yet
Plasmid construction
-> not_yet
Transformed
-> not_yet
T1 seed harvested
-> not_yet
T2 seed harvested
-> not_yet
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
Comment