fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G68120 (BPC3, BBR/BPC3, ATBPC3)

Alias BPC3, BBR/BPC3, ATBPC3
TF Classification
FioreDBBBR_BPC (Click to show phylogenetic tree)
RARTF
AtTFDBBBR/BPC
PlnTFDBBBR/BPC (v3.0), BBR/BPC (v1.0)
DATFBBR-BPC
TAIR short description basic pentacysteine 3 (.1)
TAIR annotation basic pentacysteine 3 (BPC3); CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409); BEST Arabidopsis thaliana protein match is: basic pentacysteine1 (TAIR:AT2G01930.2); Has 216 Blast hits to 216 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 216; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT1G68120.1 3
Entry clone (w/o stop) IE_06D01_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(C) 5634: nucleus ->nucleus
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(P) 9723: other biological processes ->response to ethylene
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 5 6
soybean 1 12 13
rice
sorghum
physcomitrella
Total 2 17 19
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
TSVKGNLGLQLLSPTM at 23/283 in poplar Pt023734 (Type III)
PFRGGHLGLQLMPGIT at 21/279 in soybean Gm012346 (Type III)
TSFKSHLGLQLMSSMP at 24/282 in soybean Gm025130 (Type III)
TPVKGNLGLQLMSPTM at 27/288 in poplar Pt026988 (Type III)
TPVKGNLGLQLMSPTM at 27/288 in poplar Pt026989 (Type III)
TTVKGNLGLQLMAPTM at 23/284 in poplar Pt023765 (Type III)
TSFKSHLGLQLMSSMP at 24/283 in soybean Gm018076 (Type III)
TSFKSHLGLQLMSSLP at 24/282 in soybean Gm018071 (Type III)
TSFKSHLGLQLMSSMP at 24/282 in soybean Gm025131 (Type III)
TSFKSHLGLQLMSSLP at 24/282 in soybean Gm018072 (Type III)
TSFKSHLGLQLMSSMP at 24/283 in soybean Gm018074 (Type III)
TSFKSHLGLQLMSSMP at 24/282 in soybean Gm025132 (Type III)
TSFKSHLGLQLMSSMP at 24/282 in soybean Gm025133 (Type III)
TSFKSHLGLQLMSSLP at 24/282 in soybean Gm018073 (Type III)
TSFKSHLGLQLMSSMP at 24/283 in soybean Gm018075 (Type III)
TSFKSHLGLQLMSSMP at 24/282 in soybean Gm025129 (Type III)
PFRGGHLGLQLMPGMT at 21/279 in soybean Gm020733 (Type II)

        

       

       

        Status
        
         

          
Plasmid construction -> not_yet

          
Plasmid construction -> not_yet

          
Transformed -> not_yet

          
T1 seed harvested -> not_yet

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

          Comment