fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G68130 (IDD14beta, IDD14alpha, ATIDD14)

Alias IDD14beta, IDD14alpha, ATIDD14
TF Classification
FioreDBC2H2ZnF (Click to show phylogenetic tree)
RARTFC2H2(Zn) / InterPro C2H2
AtTFDBC2H2
PlnTFDBC2H2 (v3.0), C2H2 (v1.0)
DATFC2H2
TAIR short description indeterminate(ID)-domain 14 (.1), indeterminate(ID)-domain 14 (.2)
TAIR annotation indeterminate(ID)-domain 14 (IDD14); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: indeterminate(ID)-domain 16 (TAIR:AT1G25250.1); Has 34626 Blast hits to 17187 proteins in 314 species: Archae - 1; Bacteria - 0; Metazoa - 32617; Fungi - 232; Plants - 764; Viruses - 1; Other Eukaryotes - 1011 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT1G68130.1 30
AT1G68130.2 23
Entry clone (w/o stop)
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10601: other cellular processes ->positive regulation of auxin biosynthetic process
(P) 2000012: transport ->regulation of auxin polar transport
(P) 2000904: other cellular processes ->regulation of starch metabolic process
(F) 3676: nucleic acid binding ->nucleic acid binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43621: protein binding ->protein self-association
(F) 44212: DNA or RNA binding ->transcription regulatory region DNA binding
(F) 46872: other binding ->metal ion binding
(F) 46982: protein binding ->protein heterodimerization activity
(P) 48444: developmental processes ->floral organ morphogenesis
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(F) 8270: other binding ->zinc ion binding
(P) 9630: response to abiotic or biotic stimulus ->gravitropism
(P) 9965: developmental processes ->leaf morphogenesis
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 3 4
soybean 3 3 6
rice 1 1
sorghum 1 1 2
physcomitrella 1 1
Total 2 6 6 14
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
KLLHPNLDLQLSTPTN at 285/506 in soybean Gm018077 (Type III)
STTSHNLELQLLPSST at 265/438 in soybean Gm020732 (Type II)
AAHYHNLELQLSTASG at 261/456 in poplar Pt022676 (Type III)
AAHYQNLELQLSTTSR at 261/455 in poplar Pt026756 (Type III)
GGVHHNLELQLMPPRG at 315/536 in sorghum Sb015948 (Type II)
SQQEHNLELQLLPSSS at 250/393 in poplar Pt042165 (Type III)
NKVHPNLELQLSNTTP at 256/380 in soybean Gm020360 (Type II)
SQQEHNLELQLLPSSS at 250/422 in poplar Pt033952 (Type II)
RGGHHNLELQLMPPSC at 289/499 in sorghum Sb006007 (Type Ia)
KLLHPNLDLQLSTPTT at 251/439 in soybean Gm025128 (Type III)

        

       

       

        Status
        
         

          
Plasmid construction -> The work interrupted(07Feb)

          
Plasmid construction -> The work interrupted(07Feb)

          
Transformed -> not_yet

          
T1 seed harvested -> not_yet

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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