fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G75390 (ATBZIP44)

Alias ATBZIP44
TF Classification
FioreDBbZIP (Click to show phylogenetic tree)
RARTFTGA3
AtTFDBbZIP
PlnTFDBbZIP (v3.0), bZIP (v1.0)
DATFbZIP
TAIR short description basic leucine-zipper 44 (.1.2)
TAIR annotation basic leucine-zipper 44 (bZIP44); FUNCTIONS IN: DNA binding, protein heterodimerization activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: G-box binding factor 6 (TAIR:AT4G34590.1); Has 1696 Blast hits to 1696 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 67; Plants - 1605; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT1G75390.1 61
AT1G75390.2 40
Entry clone (w/o stop) IE_01H05
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(F) 44212: nucleic acid binding ->transcription regulatory region DNA binding
(F) 46982: protein binding ->protein heterodimerization activity
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(P) 9845: developmental processes ->seed germination
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 2 3 6
soybean 5 5 10
rice
sorghum
physcomitrella 1 1
Total 1 1 7 8 17
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
ASDGARLGLNLNRSEL at 83/259 in physcomitrella Pp005523 (Type Ib)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

          

           ID
           Species
           Construct
           Date
           Comment
           Phenotype
           Photo
          

          

           ID50074
           Torenia
           35S:AtCDS-SRDX
           2008-10-01
           development bulk, 3 lines 
           big flower (1 line) and small flower (1 line) 
[Publication link]		
            
          

         

         

          Comment