fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G76580 (SPL16)

Alias SPL16
TF Classification
FioreDBSBP (Click to show phylogenetic tree)
RARTFSBP
AtTFDBSBP
PlnTFDB
DATF
TAIR short description Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1)
TAIR annotation Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter binding protein-like 14 (TAIR:AT1G20980.1); Has 4275 Blast hits to 1172 proteins in 134 species: Archae - 0; Bacteria - 31; Metazoa - 161; Fungi - 128; Plants - 962; Viruses - 0; Other Eukaryotes - 2993 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT1G76580.1 22
Entry clone (w/o stop) IE_05A08(09B06)_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 44212: nucleic acid binding ->transcription regulatory region DNA binding
(F) 46872: other binding ->metal ion binding
(C) 5634: nucleus ->nucleus
(C) 5886: plasma membrane ->plasma membrane
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2
soybean 1 1 2
rice
sorghum
physcomitrella
Total 2 2 4
Repression motif 
LSNKKGLDLNLPCGFN at 37/988 in AT1G76580.1
QDTRSSLSLQLFTSSP at 348/988 in AT1G76580.1
Repression motif
in putative orthologs		 
SVDDDGLGLNLGGSLT at 71/1044 in poplar Pt038233 (Type II)
ANEDDGLGLNLGGSLT at 109/1039 in poplar Pt000952 (Type III)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
no visible phenotype (direct input)
CRES-T phenotype from publication
CRES-T phenotype from bulk project short stamen, sterile or low fertility (A20575-56)
Phenotype in ornamental plants
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