fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G79840 (GL2)

Alias GL2
TF Classification
FioreDBHD (Click to show phylogenetic tree)
RARTFHB / ANTHOCYANINLESS2
AtTFDBHomeobox / HD-Zip IV
PlnTFDBHB (v3.0), HB (v1.0)
DATFHB
TAIR short description GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2)
TAIR annotation Glabra 2, a homeodomain protein affects epidermal cell identity including trichomes, root hairs, and seed coat. It also down-regulates seed oil content. Expressed in atrichoblasts and required to suppress root hair development. Also expressed abundantly during early seed development. Directly regulated by WER. (.1), Glabra 2, a homeodomain protein affects epidermal cell identity including trichomes, root hairs, and seed coat. It also down-regulates seed oil content. Expressed in atrichoblasts and required to suppress root hair development. Also expressed abundantly during early seed development. Directly regulated by WER. (.2)
Gene model
Gene model cDNA support
AT1G79840.2 157
AT1G79840.1 14
Entry clone (w/o stop) RE_0534_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10062: other cellular processes ->negative regulation of trichoblast fate specification
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(F) 8289: other binding ->lipid binding
(P) 9957: other cellular processes ->epidermal cell fate specification
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR834: 3'-AATGGTGGCGATGACGATGGT-5'
5'--3'

miR843: 3'-AGGTTACTTCGAGCTGGATTT-5'
Orthologs
Type
Ia Ib II III Total
poplar
soybean
rice
sorghum
physcomitrella
Total 0E0
Repression motif 
FFSSPALSLSLAGIFR at 20/747 in AT1G79840.1
FFSSPALSLSLAGIFR at 49/776 in AT1G79840.2
Repression motif
in putative orthologs
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
View all photo 		—cA•¨ŠúFª–³‚µ(4/17), –{—tFbushy(4/17), ‰ÔF¬‚³‚¢(3/17), ‚³‚âF‚²‚‚²‚Eæ‚Æ‚ª‚è(7/17), ‰ÔŒsF’¸‰è—D¨Žã(8/17), ‚³‚âŠÔŠu’Z‚¢(3/17), ãóŒ`¬FˆÙí, ‚»‚Ì‘¼FŒÍŽ€”‘½‚¢(8/17), (phenotype_A20107:leaf_phenotype—“ŽQÆ/flower_¬‚³‚¢/silique_‚²‚‚²‚Eæ‚Æ‚ª‚è/stem_’¸‰è—D¨Žã/ƒƒ[ƒbƒgbushy/‚³‚âŠÔ’Z‚¢)
abnormal silique (A20107), abnormal shaped silique (direct input, A20107), loss of apical dominance (direct input, A20107), abnormal seed (direct input), abnormal flower (A20107), bushy (A20107)
and more...
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
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