fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT1G80840 (ATWRKY40, WRKY40)

Alias ATWRKY40, WRKY40
TF Classification
FioreDBWRKY (Click to show phylogenetic tree)
RARTFWRKY(Zn)
AtTFDBWRKY
PlnTFDBWRKY (v3.0), WRKY (v1.0)
DATFWRKY
TAIR short description WRKY DNA-binding protein 40 (.1)
TAIR annotation Pathogen-induced transcription factor. Binds W-box sequences in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Coexpression with WRKY18 or WRKY60 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two. (.1)
Gene model
Gene model cDNA support
AT1G80840.1 54
Entry clone (w/o stop) IE_03G06
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10200: other biological processes ->response to chitin
(P) 2237: response to abiotic or biotic stimulus ->response to molecule of bacterial origin
(P) 31347: response to stress ->regulation of defense response
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 42742: response to abiotic or biotic stimulus ->defense response to bacterium
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(F) 44212: nucleic acid binding ->transcription regulatory region DNA binding
(P) 45892: other cellular processes ->negative regulation of transcription, DNA-templated
(P) 50691: response to abiotic or biotic stimulus ->regulation of defense response to virus by host
(P) 50832: response to abiotic or biotic stimulus ->defense response to fungus
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(P) 9611: response to stress ->response to wounding
(P) 9751: other biological processes ->response to salicylic acid
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 3 1 5
soybean 1 4 5
rice 1 1
sorghum 1 1
physcomitrella
Total 2 2 7 1 12
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
WVDTSLDLNINPLRVKS at 11/318 in poplar Pt030833 (Type II)
WVDTSLDLNINPLRVKS at 11/316 in poplar Pt011241 (Type Ia)
WINTSLDLNINPRRVHE at 11/311 in soybean Gm017186 (Type II)
WVNTSLDLNINPFKHVN at 10/320 in poplar Pt006824 (Type III)
MINTSLDLNINPHRLHE at 12/309 in soybean Gm038414 (Type Ia)
WVNTSLDLNINPFKHVN at 10/320 in poplar Pt008671 (Type II)
WVNTSLDLNINPFKHVN at 10/318 in poplar Pt008672 (Type II)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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