fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT2G01930 (BPC1, BBR/BPC1, ATBPC1)

Alias BPC1, BBR/BPC1, ATBPC1
TF Classification
FioreDBBBR_BPC (Click to show phylogenetic tree)
RARTF
AtTFDBBBR/BPC
PlnTFDBBBR/BPC (v3.0), BBR/BPC (v1.0)
DATFBBR-BPC
TAIR short description basic pentacysteine1 (.1.2)
TAIR annotation BASIC PENTACYSTEINE1 (BPC1) is a regulator of the homeotic Arabidopsis thaliana gene SEEDSTICK (STK), which controls ovule identity. BPC1 induces conformational changes by cooperative binding to purine-rich elements present in the STK regulatory sequence. STK is upregulated in bpc1 mutant. (.1), BASIC PENTACYSTEINE1 (BPC1) is a regulator of the homeotic Arabidopsis thaliana gene SEEDSTICK (STK), which controls ovule identity. BPC1 induces conformational changes by cooperative binding to purine-rich elements present in the STK regulatory sequence. STK is upregulated in bpc1 mutant. (.2)
Gene model
Gene model cDNA support
AT2G01930.2 32
AT2G01930.1 28
Entry clone (w/o stop) IE_06D02
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(P) 50793: other biological processes ->regulation of developmental process
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(P) 9723: other biological processes ->response to ethylene
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 6 7
soybean 1 12 13
rice
sorghum
physcomitrella
Total 2 18 20
Repression motif 
SSFKGNLGLQLMSTID at 22/283 in AT2G01930.1
SSFKGNLGLQLMSTID at 22/283 in AT2G01930.2
Repression motif
in putative orthologs		 
TSFKSHLGLQLMSSMP at 24/282 in soybean Gm025133 (Type III)
TSFKSHLGLQLMSSMP at 24/283 in soybean Gm018076 (Type III)
TSFKSHLGLQLMSSMP at 24/282 in soybean Gm025131 (Type III)
TSFKSHLGLQLMSSMP at 24/283 in soybean Gm018074 (Type III)
TSFKSHLGLQLMSSMP at 24/283 in soybean Gm018075 (Type III)
PFRGGHLGLQLMPGIT at 21/279 in soybean Gm012346 (Type II)
TSFKSHLGLQLMSSLP at 24/282 in soybean Gm018072 (Type III)
TPVKGNLGLQLMSPTM at 27/288 in poplar Pt026989 (Type III)
TTVKGNLGLQLMAPTM at 23/284 in poplar Pt023765 (Type III)
TSFKSHLGLQLMSSLP at 24/282 in soybean Gm018073 (Type III)
TSFKSHLGLQLMSSMP at 24/282 in soybean Gm025130 (Type III)
TSVKGNLGLQLLSPTM at 23/283 in poplar Pt023734 (Type III)
TPVKGNLGLQLMSPTM at 27/288 in poplar Pt026988 (Type III)
PFRGGHLGLQLMPGMT at 21/279 in soybean Gm020733 (Type III)
TSFKSHLGLQLMSSMP at 24/282 in soybean Gm025129 (Type III)
TSFKSHLGLQLMSSLP at 24/282 in soybean Gm018071 (Type III)
TSFKSHLGLQLMSSMP at 24/282 in soybean Gm025132 (Type III)
Status
Plasmid construction -> not_yet
Plasmid construction -> not_yet
Transformed -> not_yet
T1 seed harvested -> not_yet
T2 seed harvested -> not_yet
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
Comment