fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT2G03060 (AGL30)

Alias AGL30
TF Classification
FioreDBMADS (Click to show phylogenetic tree)
RARTFMADS / APETALA1
AtTFDBMADS / TypeII
PlnTFDBMADS (v3.0), MADS (v1.0)
DATFMADS
TAIR short description AGAMOUS-like 30 (.1.2)
TAIR annotation Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators. AGL30 is expressed in pollen.It forms heterodimers with other MICK family members. (.1.2)
Gene model
Gene model cDNA support
AT2G03060.2 5
AT2G03060.1 2
Entry clone (w/o stop) IE_06B06_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10152: developmental processes ->pollen maturation
(C) 16021: other membranes ->integral component of membrane
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 45944: other metabolic processes ->positive regulation of transcription from RNA polymerase II promoter
(F) 46983: protein binding ->protein dimerization activity
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 80092: cell organization and biogenesis ->regulation of pollen tube growth
(P) 9555: developmental processes ->pollen development
(F) 982: transcription factor activity ->transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding
(F) 987: DNA or RNA binding ->core promoter proximal region sequence-specific DNA binding
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2
soybean 1 1 2
rice
sorghum
physcomitrella
Total 2 2 4
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
LNGTASLRLRLAGQYP at 256/344 in poplar Pt033603 (Type II)

        

       

       

        Status
        
         

          
Plasmid construction -> The work interrupted(05Mar)

          
Plasmid construction -> The work interrupted(05Mar)

          
Transformed -> not_yet

          
T1 seed harvested -> not_yet

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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