fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT2G22540 (AGL22, SVP)

Alias AGL22, SVP
TF Classification
FioreDBMADS (Click to show phylogenetic tree)
RARTFMADS / SHORT VEGETATIVE PHASE
AtTFDBMADS / TypeII
PlnTFDBMADS (v3.0), MADS (v1.0)
DATFMADS
TAIR short description SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2)
TAIR annotation Encodes a nuclear protein that acts as a floral repressor and that functions within the thermosensory pathway. SVP represses FT expression via direct binding to the vCArG III motif in the FT promoter. (.1.2)
Gene model
Gene model cDNA support
AT2G22540.1 58
AT2G22540.2 44
Entry clone (w/o stop) IE_02H08_x IE_0059
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10076: other biological processes ->maintenance of floral meristem identity
(P) 10582: developmental processes ->floral meristem determinacy
(P) 30154: other cellular processes ->cell differentiation
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(P) 45892: transcription,DNA-dependent ->negative regulation of transcription, DNA-templated
(P) 45944: transcription,DNA-dependent ->positive regulation of transcription from RNA polymerase II promoter
(F) 46983: protein binding ->protein dimerization activity
(P) 48438: developmental processes ->floral whorl development
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(F) 900: nucleic acid binding ->translation repressor activity, nucleic acid binding
(P) 9266: response to abiotic or biotic stimulus ->response to temperature stimulus
(F) 977: DNA or RNA binding ->RNA polymerase II regulatory region sequence-specific DNA binding
(P) 9910: developmental processes ->negative regulation of flower development
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR5017: 3'-GTAAGGTTTAATCATTGTTTA-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 2 3
soybean 1 8 9
rice 1 2 3
sorghum 1 1
physcomitrella
Total 4 12 16
Repression motif 
KLDQPSLELQLVENSD at 82/240 in AT2G22540.1
ESSDTSLRLGLPYGG at 230/240 in AT2G22540.1
KLDQPSLELQLVENSD at 77/235 in AT2G22540.2
ESSDTSLRLGLPYGG at 225/235 in AT2G22540.2
Repression motif
in putative orthologs		 
KAEQPSLDLNLEHSKY at 83/228 in rice Os009970 (Type II)
DGSDVSLKLGLPCGAW at 217/228 in rice Os009970 (Type II)
GGSDTSLKLGLP at 198/204 in soybean Gm020472 (Type II)
YSSDTSLRLGLSLFSS at 237/248 in rice Os011599 (Type Ia)
DGSDISLKLGLP at 217/223 in rice Os024136 (Type II)
RMEQPSLELQLVENSN at 83/227 in soybean Gm000403 (Type Ia)
ESSDTSLKLGLPYSG at 218/227 in soybean Gm000403 (Type Ia)
RMEQPSLELQLVENSN at 83/227 in soybean Gm002993 (Type II)
ESSDTSLKLGLPYSG at 218/227 in soybean Gm002993 (Type II)
KLDKPSLELQLEASNS at 83/234 in soybean Gm014645 (Type II)
GSSDISLTLGLPFSN at 225/234 in soybean Gm014645 (Type II)
RMEQPSLELQLVENSN at 83/171 in soybean Gm002994 (Type II)
KLEQPSLELQLVEDST at 83/227 in poplar Pt036867 (Type Ia)
ESSDTSLKLGLPFSN at 218/227 in poplar Pt036867 (Type Ia)
KLDKPSLELQLEASNS at 83/234 in soybean Gm014646 (Type II)
GSSDISLTLGLPFSN at 225/234 in soybean Gm014646 (Type II)
GGSDTSLKLGLP at 198/204 in soybean Gm020471 (Type II)
DGSDICLKLSLPIKGR at 219/317 in sorghum Sb033602 (Type Ia)
GGSDTSLKLGLP at 199/205 in soybean Gm020470 (Type II)
RMEQPSLELQLVENSN at 83/203 in soybean Gm002995 (Type II)
ESSDTSLKLGLPYSG at 194/203 in soybean Gm002995 (Type II)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
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