fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT2G27100 (SE)

Alias SE
TF Classification
FioreDBC2H2ZnF (Click to show phylogenetic tree)
RARTFC2H2(Zn) / InterPro C2H2
AtTFDBC2H2
PlnTFDB
DATF
TAIR short description C2H2 zinc-finger protein SERRATE (SE) (.1)
TAIR annotation Identified as a leaf form mutant by Redei having serrated leaves. Further analysis of the single loss of function allele indicated pleiotropic effects extending to many aspects of shoot development such as taller meristems, alterations in phase transition, phyllotaxy and branching. Encodes a single zinc finger containing protein that is expressed in meristems and organ primordia. (.1)
Gene model
Gene model cDNA support
AT2G27100.1 52
Entry clone (w/o stop)
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10267: other metabolic processes ->production of ta-siRNAs involved in RNA interference
(C) 10445: other intracellular components ->nuclear dicing body
(C) 16607: other intracellular components ->nuclear speck
(P) 2000011: developmental processes ->regulation of adaxial/abaxial pattern formation
(P) 31053: other cellular processes ->primary miRNA processing
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 381: other cellular processes ->regulation of alternative mRNA splicing, via spliceosome
(F) 46872: other binding ->metal ion binding
(P) 48367: developmental processes ->shoot system development
(P) 48509: other biological processes ->regulation of meristem development
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(C) 5730: other intracellular components ->nucleolus
(C) 5829: cytosol ->cytosol
(C) 5846: other intracellular components ->nuclear cap binding complex
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(P) 6397: other metabolic processes ->mRNA processing
(P) 8380: other cellular processes ->RNA splicing
(C) 9507: chloroplast ->chloroplast
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2
soybean 1 2 3
rice 1 2 3
sorghum 1 2 3
physcomitrella 1 1
Total 5 7 12
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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