fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT2G33550

Alias
TF Classification
FioreDBTrihelix (Click to show phylogenetic tree)
RARTFTrihelix
AtTFDB
PlnTFDBTrihelix (v3.0), Trihelix (v1.0)
DATFTrihelix
TAIR short description Homeodomain-like superfamily protein (.1)
TAIR annotation Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors (TAIR:AT4G31270.1); Has 743 Blast hits to 735 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 25; Fungi - 8; Plants - 568; Viruses - 0; Other Eukaryotes - 142 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT2G33550.1 13
Entry clone (w/o stop) RE_1016_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 42803: protein binding ->protein homodimerization activity
(P) 45892: other cellular processes ->negative regulation of transcription, DNA-templated
(P) 50777: other biological processes ->negative regulation of immune response
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(P) 6952: response to stress ->defense response
(P) 71219: response to abiotic or biotic stimulus ->cellular response to molecule of bacterial origin
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 3 4
soybean 1 3 4
rice 1 1
sorghum 1 1
physcomitrella 1 1
Total 3 2 6 11
Repression motif 
QLEVQNLNLKLDREQR at 278/314 in AT2G33550.1
Repression motif
in putative orthologs		 
GSGPTTLALSLSSSPP at 149/319 in soybean Gm055787 (Type Ia)
MPSLLSLSLSLSLSPF at 6/426 in rice Os008019 (Type Ib)
GGTVQGLALALAPSSA at 163/342 in poplar Pt010936 (Type II)
LDSPAALALALSSSSP at 146/325 in soybean Gm029301 (Type II)
GGTVPGLALALAPSST at 163/346 in poplar Pt032402 (Type Ia)
GGTVQGLALALAPSSA at 163/314 in poplar Pt010937 (Type II)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
Comment