fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT2G34600 (TIFY5B, JAZ7)

Alias TIFY5B, JAZ7
TF Classification
FioreDBZIM (Click to show phylogenetic tree)
RARTF
AtTFDB
PlnTFDBTify (v3.0), ZIM (v1.0)
DATFZIM
TAIR short description jasmonate-zim-domain protein 7 (.1)
TAIR annotation jasmonate-zim-domain protein 7 (JAZ7); CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399); BEST Arabidopsis thaliana protein match is: jasmonate-zim-domain protein 8 (TAIR:AT1G30135.1); Has 38 Blast hits to 38 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT2G34600.1 10
Entry clone (w/o stop) IE_0015
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10200: other biological processes ->response to chitin
(P) 1903507: other cellular processes ->negative regulation of nucleic acid-templated transcription
(P) 2000022: other cellular processes ->regulation of jasmonic acid mediated signaling pathway
(P) 31347: response to stress ->regulation of defense response
(F) 3714: other molecular functions ->transcription corepressor activity
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
(P) 6952: response to stress ->defense response
(P) 9611: response to stress ->response to wounding
(P) 9753: other biological processes ->response to jasmonic acid
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miRN4412: 3'-TTGGTAGTAGTAGTAGTAGT-5'
Orthologs
Type
Ia Ib II III Total
poplar
soybean
rice
sorghum
physcomitrella
Total 0E0
Repression motif 
MQTKCDLELRLLTSSY at 24/148 in AT2G34600.1
Repression motif
in putative orthologs
Status
Plasmid construction -> not_yet
Plasmid construction -> not_yet
Transformed -> not_yet
T1 seed harvested -> not_yet
T2 seed harvested -> not_yet
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
Comment