fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT2G44730

Alias
TF Classification
FioreDBTrihelix (Click to show phylogenetic tree)
RARTFTrihelix
AtTFDB
PlnTFDBTrihelix (v3.0), Trihelix (v1.0)
DATFTrihelix
TAIR short description Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1)
TAIR annotation Alcohol dehydrogenase transcription factor Myb/SANT-like family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), MADF domain (InterPro:IPR006578), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G24860.1); Has 587 Blast hits to 557 proteins in 72 species: Archae - 0; Bacteria - 33; Metazoa - 106; Fungi - 10; Plants - 386; Viruses - 8; Other Eukaryotes - 44 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT2G44730.1 24
Entry clone (w/o stop) IE_04C04_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 19760: other metabolic processes ->glucosinolate metabolic process
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(F) 44212: DNA or RNA binding ->transcription regulatory region DNA binding
(C) 5634: nucleus ->nucleus
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miRN145: 3'-TTTTCAATTCCTAGATTAAAA-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2
soybean 1 1
rice
sorghum 1 1
physcomitrella
Total 2 1 1 4
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
RMEERRLELSLQMEKE at 264/425 in sorghum Sb021140 (Type Ib)
CMLARSLALCLLFMLV at 341/425 in sorghum Sb021140 (Type Ib)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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