fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT2G44910 (ATHB4, ATHB-4)

Alias ATHB4, ATHB-4
TF Classification
FioreDBHD (Click to show phylogenetic tree)
RARTFHB / ATHB-2
AtTFDBHomeobox / HD-Zip II
PlnTFDBHB (v3.0), HB (v1.0)
DATFHB
TAIR short description ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 4, homeobox-leucine zipper protein 4 (.1)
TAIR annotation Encodes a homeodomain protein whose expression displays a dependence on phyB for both red and far-red light response. Also involved in the shade avoidance syndrome. (.1)
Gene model
Gene model cDNA support
AT2G44910.1 5
Entry clone (w/o stop) IE_03D12
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10218: response to abiotic or biotic stimulus ->response to far red light
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(C) 9506: other cellular components ->plasmodesma
(P) 9641: response to abiotic or biotic stimulus ->shade avoidance
(P) 9725: other biological processes ->response to hormone
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 6 7
soybean 1 6 7
rice 1 1
sorghum 1 1 2
physcomitrella
Total 2 2 13 17
Repression motif 
GERDDGLGLSLSLGNS at 6/318 in AT2G44910.1
QQKEPSLRLNLMPLTT at 22/318 in AT2G44910.1
Repression motif
in putative orthologs		 
GEKDDGLGLGLSLKLG at 7/308 in soybean Gm018184 (Type II)
MAEKEDLGLSLSLSVP at 8/305 in poplar Pt011704 (Type III)
MAEKEDLGLSLSLSVP at 8/305 in poplar Pt011705 (Type III)
TVEKEDLGLSLSLSFP at 7/285 in soybean Gm029715 (Type III)
QNPPTHLHLNLVSSSP at 23/285 in soybean Gm029715 (Type III)
MELALSLGDTSK at 2/294 in poplar Pt006139 (Type III)
DGDDNHLGLGLSLSLG at 88/511 in sorghum Sb021157 (Type III)
YCPSSCLGLDLSFFFA at 435/511 in sorghum Sb021157 (Type III)
MERAEDLRLSLSLSSP at 7/247 in rice Os018327 (Type II)
KDDEFGLSLSLSLGGV at 9/289 in soybean Gm050338 (Type III)
MVQKEDLGLSLSLNFP at 7/296 in soybean Gm011449 (Type III)
GDKNDGLGLSLSLGYA at 7/295 in poplar Pt040049 (Type Ia)
HHQQPSLKLNLMPLAS at 27/295 in poplar Pt040049 (Type Ia)
MERVEDLGLSLSLSSS at 68/363 in sorghum Sb029730 (Type Ia)
MELGLSLGDAAT at 2/374 in poplar Pt031227 (Type III)
MVQKEDLGLSLSLNFP at 7/299 in soybean Gm047093 (Type III)
MAGKEDLGLSLSLSVP at 7/302 in poplar Pt032091 (Type III)
QNQHSLQLNLMPSLV at 22/302 in poplar Pt032091 (Type III)
MVQKEDLGLSLSLNFP at 7/298 in soybean Gm011448 (Type III)
GDKNDGLGLSLSLGFD at 7/298 in poplar Pt017318 (Type III)
HQQQPSLKLNLMPVPS at 28/298 in poplar Pt017318 (Type III)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
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