fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT2G45660 (ATSOC1, SOC1, AGL20)

Alias ATSOC1, SOC1, AGL20
TF Classification
FioreDBMADS (Click to show phylogenetic tree)
RARTFMADS / SOC1
AtTFDBMADS / TypeII
PlnTFDBMADS (v3.0), MADS (v1.0)
DATFMADS
TAIR short description SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1)
TAIR annotation Controls flowering and is required for CO to promote flowering. It acts downstream of FT. Overexpression of (SOC1) AGL20 suppresses not only the late flowering of plants that have functional FRI and FLC alleles but also the delayed phase transitions during the vegetative stages of development. AGL20/SOC1 acts with AGL24 to promote flowering and inflorescence meristem identity.AGL20 upregulates expression of AGL24 in response to GA. (.1)
Gene model
Gene model cDNA support
AT2G45660.1 42
Entry clone (w/o stop) RE_1177_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10077: other biological processes ->maintenance of inflorescence meristem identity
(P) 30154: other cellular processes ->cell differentiation
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 45893: other cellular processes ->positive regulation of transcription, DNA-templated
(P) 45944: other cellular processes ->positive regulation of transcription from RNA polymerase II promoter
(F) 46983: protein binding ->protein dimerization activity
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(C) 5737: other cytoplasmic components ->cytoplasm
(P) 60: transport ->protein import into nucleus, translocation
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(F) 8134: protein binding ->transcription factor binding
(P) 9409: response to stress ->response to cold
(P) 9739: other biological processes ->response to gibberellin
(F) 977: DNA or RNA binding ->RNA polymerase II regulatory region sequence-specific DNA binding
(P) 9908: developmental processes ->flower development
(P) 9911: developmental processes ->positive regulation of flower development
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 2 3
soybean 1 2 6 9
rice 1 1 1 3
sorghum 1 1 2
physcomitrella
Total 4 4 9 17
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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