fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT2G45800 (PLIM2a)

Alias PLIM2a
TF Classification
FioreDBLIM (Click to show phylogenetic tree)
RARTFLIM-domain
AtTFDB
PlnTFDBLIM(.1), Orphans(.2) (v3.0), LIM (v1.0)
DATFLIM
TAIR short description PLIM2a, GATA type zinc finger transcription factor family protein (.1.2)
TAIR annotation GATA type zinc finger transcription factor family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781); BEST Arabidopsis thaliana protein match is: GATA type zinc finger transcription factor family protein (TAIR:AT3G61230.1); Has 6011 Blast hits to 3830 proteins in 180 species: Archae - 0; Bacteria - 0; Metazoa - 5054; Fungi - 46; Plants - 459; Viruses - 0; Other Eukaryotes - 452 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT2G45800.1 25
AT2G45800.2 15
Entry clone (w/o stop) RE_02D09
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(C) 15629: other intracellular components ->actin cytoskeleton
(F) 46872: other binding ->metal ion binding
(F) 51015: other binding ->actin filament binding
(P) 51017: other cellular processes ->actin filament bundle assembly
(C) 5737: other cytoplasmic components ->cytoplasm
(C) 5856: other intracellular components ->cytoskeleton
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 10 11
soybean 1 23 24
rice 1 4 5
sorghum 1 4 5
physcomitrella 1 2 3
Total 5 43 48
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

          

           ID
           Species
           Construct
           Date
           Comment
           Phenotype
           Photo
          

          

           ID538
           Torenia
           35S:AtCDS-SRDX
           2007-07-06
           flower bulk, 1 of 7 lines 
           semi-dwarf 
[Publication link]		
           
          

         

         

          Comment