fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT2G46130 (ATWRKY43, WRKY43)

Alias ATWRKY43, WRKY43
TF Classification
FioreDBWRKY (Click to show phylogenetic tree)
RARTFWRKY(Zn)
AtTFDBWRKY
PlnTFDBWRKY (v3.0), WRKY (v1.0)
DATFWRKY
TAIR short description WRKY DNA-binding protein 43 (.1.2)
TAIR annotation member of WRKY Transcription Factor; Group II-c (.1), member of WRKY Transcription Factor; Group II-c (.2)
Gene model
Gene model cDNA support
AT2G46130.1 9
AT2G46130.2 2
Entry clone (w/o stop) IE_08C03_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 51 52
soybean 1 56 57
rice 1 26 27
sorghum 1 25 26
physcomitrella 1 22 23
Total 5 180 185
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
ANAFDALGLGLLQPPS at 306/543 in sorghum Sb033068 (Type III)
HLQGYNLTLSLPSSSD at 264/303 in poplar Pt040780 (Type III)
TTGNAQLALALARNTN at 360/536 in poplar Pt014769 (Type III)
MVRKIDLSLKLAEDSD at 44/748 in physcomitrella Pp001323 (Type III)
NGPMNQLGLRLTNSSG at 504/748 in physcomitrella Pp001323 (Type III)

        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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