fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT2G47070 (SPL1)

Alias SPL1
TF Classification
FioreDBSBP (Click to show phylogenetic tree)
RARTFSBP
AtTFDBSBP
PlnTFDBSBP (v3.0), SBP (v1.0)
DATFSBP
TAIR short description squamosa promoter binding protein-like 1 (.1)
TAIR annotation member of SPL gene family, encodes DNA binding proteins and putative transcription factors. All have the SBP-box, which encodes the SBP-domain, required for and sufficient for interaction with DNA. (.1)
Gene model
Gene model cDNA support
AT2G47070.1 73
Entry clone (w/o stop) IE_07H12
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(C) 16021: other membranes ->integral component of membrane
(P) 16567: other cellular processes ->protein ubiquitination
(F) 16874: other enzyme activity ->ligase activity
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 46872: other binding ->metal ion binding
(F) 4842: transferase activity ->ubiquitin-protein transferase activity
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
(P) 6996: cell organization and biogenesis ->organelle organization
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 1 4 5
soybean 1 2 3 6
rice
sorghum
physcomitrella 1 1
Total 2 1 2 7 12
Repression motif 
GDTNGALTLNLNGESD at 81/881 in AT2G47070.1
Repression motif
in putative orthologs		 
NYEAGSLSLNLAGQGY at 118/946 in soybean Gm045931 (Type II)
NDGAGSLNLNLGGQVY at 113/1032 in soybean Gm042640 (Type III)
NDGAGSLNLNLGGQVY at 113/1032 in soybean Gm042639 (Type III)
DRETGGLSLKLGGERD at 117/1004 in poplar Pt016591 (Type III)
NDGAGSLNLNLGGQVY at 96/953 in soybean Gm024422 (Type III)
NNEVGSLNLKLGEQVY at 115/1035 in poplar Pt041897 (Type III)
NDEGGSLSLNLGGQGY at 118/989 in soybean Gm019252 (Type II)
NEEGGTLSLKLVSGST at 116/936 in soybean Gm002653 (Type Ia)
NDAAGSLNLKLGGQVY at 115/1030 in poplar Pt034157 (Type III)
DQETGGLSLKLGGQRD at 117/1002 in poplar Pt039458 (Type Ia)
NDAAGSLNLKLGGQVY at 115/1030 in poplar Pt034156 (Type III)
QEAVGSLSLKLGGDAY at 164/1296 in physcomitrella Pp008649 (Type Ib)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
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and more...
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
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