| Alias |
|
| TF Classification |
| FioreDB | FHA (Click to show phylogenetic tree) |
| RARTF | |
| AtTFDB | |
| PlnTFDB | FHA (v3.0), FHA (v1.0) |
| DATF | FHA |
|
| TAIR short description |
SMAD/FHA domain-containing protein (.1) |
| TAIR annotation |
SMAD/FHA domain-containing protein ; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: AT hook, DNA-binding motif (InterPro:IPR017956), SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (FHA) domain (InterPro:IPR000253); BEST Arabidopsis thaliana protein match is: SMAD/FHA domain-containing protein (TAIR:AT4G14490.1); Has 35808 Blast hits to 23469 proteins in 1463 species: Archae - 220; Bacteria - 3517; Metazoa - 15859; Fungi - 2964; Plants - 1604; Viruses - 219; Other Eukaryotes - 11425 (source: NCBI BLink). (.1) |
| Gene model |
|
| Entry clone (w/o stop) |
|
| External link |
|
| Gene Ontology (GO) |
| (P) 16559: cell organization and biogenesis |
->peroxisome fission |
| (F) 3677: DNA or RNA binding |
->DNA binding |
| (F) 43565: DNA or RNA binding |
->sequence-specific DNA binding |
| (C) 5634: nucleus |
->nucleus |
| (C) 5737: other cytoplasmic components |
->cytoplasm |
| (P) 6355: other cellular processes |
->regulation of transcription, DNA-templated |
|
| miRNA/tasiRNA |
|
| Orthologs |
|
Type |
| Ia |
Ib |
II |
III |
Total |
| poplar |
|
|
|
|
|
| soybean |
|
1 |
|
|
1 |
| rice |
|
|
|
|
|
| sorghum |
|
|
|
|
|
| physcomitrella |
|
|
|
|
|
| Total |
|
1 |
|
|
1 |
|
| Repression motif |
|
Repression motif
in putative orthologs |
|
| Status |
| Plasmid construction | -> not_yet |
| Plasmid construction | -> not_yet |
| Transformed | -> not_yet |
| T1 seed harvested | -> not_yet |
| T2 seed harvested | -> not_yet |
|
| CRES-T phenotype from individual project
|
|
| CRES-T phenotype from publication |
|
| CRES-T phenotype from bulk project |
|
Phenotype in ornamental plants
|
|
| Comment |
|
