fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT3G11100

Alias
TF Classification
FioreDBTrihelix (Click to show phylogenetic tree)
RARTFTrihelix
AtTFDB
PlnTFDBTrihelix (v3.0), Trihelix (v1.0)
DATFTrihelix
TAIR short description sequence-specific DNA binding transcription factors (.1)
TAIR annotation sequence-specific DNA binding transcription factors; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: MADF domain (InterPro:IPR006578); BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors (TAIR:AT5G05550.1); Has 692 Blast hits to 654 proteins in 102 species: Archae - 2; Bacteria - 29; Metazoa - 76; Fungi - 72; Plants - 388; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT3G11100.1 28
Entry clone (w/o stop) RE_03C03
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10468: other metabolic processes ->regulation of gene expression
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 42393: protein binding ->histone binding
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(C) 5737: other cytoplasmic components ->cytoplasm
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(P) 9873: other cellular processes ->ethylene-activated signaling pathway
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR5021: 3'-GAGAAAAGAAGAAGAAGAAG-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 1
soybean
rice
sorghum
physcomitrella
Total 1 1
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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