fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT3G28910 (AtMYB30, MYB30)

Alias AtMYB30, MYB30
TF Classification
FioreDBMYB (Click to show phylogenetic tree)
RARTFMYB superfamily / GL1
AtTFDBMYB / R2R3-MYBs
PlnTFDBMYB (v3.0), MYB (v1.0)
DATFMYB
TAIR short description myb domain protein 30 (.1)
TAIR annotation transcription factor myb homologue (.1)
Gene model
Gene model cDNA support
AT3G28910.1 67
Entry clone (w/o stop) RE_1404
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 1135: other molecular functions ->transcription factor activity, RNA polymerase II transcription factor recruiting
(P) 1666: response to abiotic or biotic stimulus ->response to hypoxia
(P) 30154: other cellular processes ->cell differentiation
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(P) 42761: other metabolic processes ->very long-chain fatty acid biosynthetic process
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(F) 44212: DNA or RNA binding ->transcription regulatory region DNA binding
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6357: other metabolic processes ->regulation of transcription from RNA polymerase II promoter
(P) 9617: response to abiotic or biotic stimulus ->response to bacterium
(P) 9626: response to stress ->plant-type hypersensitive response
(P) 9723: other biological processes ->response to ethylene
(P) 9733: other biological processes ->response to auxin
(P) 9739: other biological processes ->response to gibberellin
(P) 9751: other biological processes ->response to salicylic acid
(P) 9753: other biological processes ->response to jasmonic acid
(F) 981: transcription factor activity ->RNA polymerase II transcription factor activity, sequence-specific DNA binding
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 2 2 4
soybean 1 3 6 10
rice 3 2 5
sorghum 1 3 2 6
physcomitrella
Total 2 11 12 25
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

          

           ID
           Species
           Construct
           Date
           Comment
           Phenotype
           Photo
          

          

           ID50086
           Torenia
           35S:AtCDS-SRDX
           2008-10-01
           development bulk, not obtained  
            
            
          

         

         

          Comment