Alias |
|
TF Classification |
FioreDB | C3HZnF (Click to show phylogenetic tree) |
RARTF | C3H-type 1(Zn) / putative zinc finger protein |
AtTFDB | |
PlnTFDB | C3H (v3.0), C3H (v1.0) |
DATF | C3H |
|
TAIR short description |
RNA recognition motif (RRM)-containing protein (.1) |
TAIR annotation |
RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: glycine-rich RNA-binding protein 3 (TAIR:AT5G61030.1); Has 201898 Blast hits to 124021 proteins in 4668 species: Archae - 159; Bacteria - 19385; Metazoa - 64482; Fungi - 8819; Plants - 85595; Viruses - 264; Other Eukaryotes - 23194 (source: NCBI BLink). (.1) |
Gene model |
|
Entry clone (w/o stop) |
RE_02F04 |
External link |
|
Gene Ontology (GO) |
(C) 16607: nucleus |
->nuclear speck |
(F) 3677: DNA or RNA binding |
->DNA binding |
(F) 3723: DNA or RNA binding |
->RNA binding |
(F) 384: other enzyme activity |
->first spliceosomal transesterification activity |
(P) 398: other cellular processes |
->mRNA splicing, via spliceosome |
(F) 46872: other binding |
->metal ion binding |
(F) 5515: protein binding |
->protein binding |
(C) 5686: nucleus |
->U2 snRNP |
(P) 6406: DNA or RNA metabolism |
->mRNA export from nucleus |
(C) 70274: nucleus |
->RES complex |
(C) 71011: other intracellular components |
->precatalytic spliceosome |
(C) 71013: nucleus |
->catalytic step 2 spliceosome |
|
miRNA/tasiRNA |
|
Orthologs |
|
Type |
Ia |
Ib |
II |
III |
Total |
poplar |
1 |
|
|
|
1 |
soybean |
1 |
|
1 |
|
2 |
rice |
1 |
|
|
|
1 |
sorghum |
1 |
|
|
|
1 |
physcomitrella |
1 |
|
|
|
1 |
Total |
5 |
|
1 |
|
6 |
|
Repression motif |
|
Repression motif in putative orthologs |
|
Status |
Plasmid construction | -> done |
Plasmid construction | -> done |
Transformed | -> done |
T1 seed harvested | -> done |
T2 seed harvested | -> not_yet |
|
CRES-T phenotype from individual project
|
|
CRES-T phenotype from publication |
|
CRES-T phenotype from bulk project |
|
Phenotype in ornamental plants
|
|
Comment |
|