fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT3G51950

Alias
TF Classification
FioreDBC3HZnF (Click to show phylogenetic tree)
RARTF
AtTFDB
PlnTFDBC3H (v3.0), C3H (v1.0)
DATFC3H
TAIR short description Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2)
TAIR annotation Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, zinc ion binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G63450.3); Has 248 Blast hits to 214 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 5; Plants - 227; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT3G51950.1 137
AT3G51950.2 107
Entry clone (w/o stop)
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3723: DNA or RNA binding ->RNA binding
(F) 3729: DNA or RNA binding ->mRNA binding
(F) 4518: hydrolase activity ->nuclease activity
(F) 46872: other binding ->metal ion binding
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miRN145: 3'-TTTTCAATTCCTAGATTAAAA-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 3 4
soybean 1 5 6
rice
sorghum
physcomitrella
Total 2 8 10
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> not_yet

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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