fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
>>AT3G54390
Alias
TF Classification
FioreDB
Trihelix
(Click to show phylogenetic tree)
RARTF
Trihelix
AtTFDB
PlnTFDB
Trihelix
(v3.0), Trihelix (v1.0)
DATF
Trihelix
TAIR short description
sequence-specific DNA binding transcription factors (.1)
TAIR annotation
sequence-specific DNA binding transcription factors; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: aspartate/glutamate/uridylate kinase family protein (TAIR:AT3G10030.1); Has 350 Blast hits to 341 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 2; Plants - 343; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). (.1)
Gene model
Gene model
cDNA support
AT3G54390.1
17
Entry clone (w/o stop)
RE_1027_x
External link
General info
TAIR DATA
Genomic seq
TAIR seq viewer
SNP
SALK SNP Viewer
T-DNA tag line
T-DNA Express
miRNA
Search ASRP
Phylogeny
SALAD database
Promoter
ppdb
Microarray data
FioreDB
ATTED-II
ATTED-II data
NCBI GEO
NCBI GEO profile
NASC
NASCarray_SpotHistory
NASCarray_DigitalNorthern
Genevestigator
Genevestigator
eFP Browser
Developmental Map
Abiotic Stress
AtGenExpress
Development
Hormone
Abiotic Stress
Light
Pathogen
Gene Ontology (GO)
(F) 3700: transcription factor activity
->transcription factor activity, sequence-specific DNA binding
(F) 43565: DNA or RNA binding
->sequence-specific DNA binding
(C) 5634: nucleus
->nucleus
(P) 6355: other cellular processes
->regulation of transcription, DNA-templated
miRNA/tasiRNA
Orthologs
Type
Ia
Ib
II
III
Total
poplar
1
1
soybean
1
1
2
rice
1
1
sorghum
1
1
physcomitrella
1
1
Total
1
4
1
6
Repression motif
Repression motif
in putative orthologs
ELSNS
IDLRAPPP
AKVEV at 147/336 in rice
Os034806
(Type Ib)
Status
Plasmid construction
-> done
Plasmid construction
-> done
Transformed
-> done
T1 seed harvested
-> done
T2 seed harvested
-> not_yet
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
Comment