fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT3G57230 (AGL16)

Alias AGL16
TF Classification
FioreDBMADS (Click to show phylogenetic tree)
RARTFMADS / ANR1
AtTFDBMADS / TypeII
PlnTFDBMADS (v3.0), MADS (v1.0)
DATFMADS
TAIR short description AGAMOUS-like 16 (.1.2)
TAIR annotation MADS-box transcription factor. Expressed in leaf, root and stem, with higher RNA accumulation in guard cells and trichomes. (.1), MADS-box transcription factor. Expressed in leaf, root and stem, with higher RNA accumulation in guard cells and trichomes. (.2)
Gene model
Gene model cDNA support
AT3G57230.1 19
AT3G57230.2 10
Entry clone (w/o stop) RE_02F05
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10440: developmental processes ->stomatal lineage progression
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 42803: protein binding ->protein homodimerization activity
(P) 45944: other cellular processes ->positive regulation of transcription from RNA polymerase II promoter
(P) 48574: developmental processes ->long-day photoperiodism, flowering
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: transcription,DNA-dependent ->regulation of transcription, DNA-templated
(F) 8134: protein binding ->transcription factor binding
(F) 977: nucleic acid binding ->RNA polymerase II regulatory region sequence-specific DNA binding
(P) 9908: developmental processes ->flower development
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar
soybean 1 2 3
rice 1 2 1 4
sorghum
physcomitrella
Total 1 3 3 7
Repression motif 
QNLENQLELSLRGVRM at 128/240 in AT3G57230.1
QNLENQLELSLRGVRM at 127/239 in AT3G57230.2
Repression motif
in putative orthologs		 
KTAAPELGLHLP at 235/241 in rice Os009710 (Type II)
STKAMKLGLQLH at 235/241 in soybean Gm037208 (Type III)
QSTAPKLGLQLNP at 233/240 in rice Os008453 (Type Ia)
STKAMKLGLQLH at 235/241 in soybean Gm037209 (Type III)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> not_yet
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
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