Alias |
AGL1, SHP1 |
TF Classification |
FioreDB | MADS (Click to show phylogenetic tree) |
RARTF | MADS / SHATTERPROOF1 |
AtTFDB | MADS / TypeII |
PlnTFDB | MADS (v3.0), MADS (v1.0) |
DATF | MADS |
|
TAIR short description |
SHATTERPROOF 1, AGAMOUS-like 1, K-box region and MADS-box transcription factor family protein (.1.2.3) |
TAIR annotation |
One of two genes (SHP1 and SHP2) that are required for fruit dehiscence. The two genes control dehiscence zone differentiation and promote the lignification of adjacent cells. (.1.2.3) |
Gene model |
|
Entry clone (w/o stop) |
RE_02F06 |
External link |
|
Gene Ontology (GO) |
(P) 10047: other biological processes |
->fruit dehiscence |
(F) 3677: DNA or RNA binding |
->DNA binding |
(F) 3700: transcription factor activity |
->transcription factor activity, sequence-specific DNA binding |
(P) 40008: other biological processes |
->regulation of growth |
(P) 45944: other cellular processes |
->positive regulation of transcription from RNA polymerase II promoter |
(F) 46983: protein binding |
->protein dimerization activity |
(P) 48440: developmental processes |
->carpel development |
(P) 48481: developmental processes |
->plant ovule development |
(F) 5515: protein binding |
->protein binding |
(C) 5634: nucleus |
->nucleus |
(P) 6351: transcription,DNA-dependent |
->transcription, DNA-templated |
(F) 977: nucleic acid binding |
->RNA polymerase II regulatory region sequence-specific DNA binding |
(P) 9908: developmental processes |
->flower development |
|
miRNA/tasiRNA |
|
Orthologs |
|
Type |
Ia |
Ib |
II |
III |
Total |
poplar |
|
|
|
|
|
soybean |
|
|
|
|
|
rice |
|
|
|
|
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sorghum |
|
|
|
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|
physcomitrella |
|
|
|
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|
Total |
|
|
|
|
0E0 |
|
Repression motif |
|
Repression motif in putative orthologs |
|
Status |
Plasmid construction | -> done |
Plasmid construction | -> done |
Transformed | -> done |
T1 seed harvested | -> done |
T2 seed harvested | -> not_yet |
|
CRES-T phenotype from individual project
|
|
CRES-T phenotype from publication |
|
CRES-T phenotype from bulk project |
abnormal flower
(A20589-278)
abnormal stamen,
pollen defective,
sterile or low fertility
(A20304-102)
rough surface leaf
(A20713-194)
abnormal flower,
dark green leaf,
narrow leaf
(A20587-194)
dark green leaf,
narrow leaf,
abnormal flower
(A20589-250)
sterile or low fertility,
delayed growth of stamen,
abnormal shaped seed,
indehiscent silique
(A20305-140)
dark green leaf,
narrow leaf,
abnormal flower
(A20578-8)
abnormal sepal
(A20581-140)
abnormal flower
(A20589-259)
|
Phenotype in ornamental plants
|
ID |
Species |
Construct |
Date |
Comment |
Phenotype |
Photo |
ID295 |
Chrysanthemum |
35S:AtCDS-SRDX |
2006-08-04 |
  |
no phenotype  |
  |
|
Comment |
|