| Alias |
AGL1, SHP1 |
| TF Classification |
| FioreDB | MADS (Click to show phylogenetic tree) |
| RARTF | MADS / SHATTERPROOF1 |
| AtTFDB | MADS / TypeII |
| PlnTFDB | MADS (v3.0), MADS (v1.0) |
| DATF | MADS |
|
| TAIR short description |
SHATTERPROOF 1, AGAMOUS-like 1, K-box region and MADS-box transcription factor family protein (.1.2.3) |
| TAIR annotation |
One of two genes (SHP1 and SHP2) that are required for fruit dehiscence. The two genes control dehiscence zone differentiation and promote the lignification of adjacent cells. (.1.2.3) |
| Gene model |
|
| Entry clone (w/o stop) |
RE_02F06 |
| External link |
|
| Gene Ontology (GO) |
| (P) 10047: other biological processes |
->fruit dehiscence |
| (F) 3677: DNA or RNA binding |
->DNA binding |
| (F) 3700: transcription factor activity |
->transcription factor activity, sequence-specific DNA binding |
| (P) 40008: other biological processes |
->regulation of growth |
| (P) 45944: other cellular processes |
->positive regulation of transcription from RNA polymerase II promoter |
| (F) 46983: protein binding |
->protein dimerization activity |
| (P) 48440: developmental processes |
->carpel development |
| (P) 48481: developmental processes |
->plant ovule development |
| (F) 5515: protein binding |
->protein binding |
| (C) 5634: nucleus |
->nucleus |
| (P) 6351: transcription,DNA-dependent |
->transcription, DNA-templated |
| (F) 977: nucleic acid binding |
->RNA polymerase II regulatory region sequence-specific DNA binding |
| (P) 9908: developmental processes |
->flower development |
|
| miRNA/tasiRNA |
|
| Orthologs |
|
Type |
| Ia |
Ib |
II |
III |
Total |
| poplar |
|
|
|
|
|
| soybean |
|
|
|
|
|
| rice |
|
|
|
|
|
| sorghum |
|
|
|
|
|
| physcomitrella |
|
|
|
|
|
| Total |
|
|
|
|
0E0 |
|
| Repression motif |
|
Repression motif
in putative orthologs |
|
| Status |
| Plasmid construction | -> done |
| Plasmid construction | -> done |
| Transformed | -> done |
| T1 seed harvested | -> done |
| T2 seed harvested | -> not_yet |
|
| CRES-T phenotype from individual project
|
|
| CRES-T phenotype from publication |
|
| CRES-T phenotype from bulk project |
dark green leaf,
narrow leaf,
abnormal flower
(A20578-8)
sterile or low fertility,
delayed growth of stamen,
abnormal shaped seed,
indehiscent silique
(A20305-140)
abnormal flower,
dark green leaf,
narrow leaf
(A20587-194)
abnormal sepal
(A20581-140)
abnormal flower
(A20589-259)
abnormal flower
(A20589-278)
rough surface leaf
(A20713-194)
dark green leaf,
narrow leaf,
abnormal flower
(A20589-250)
abnormal stamen,
pollen defective,
sterile or low fertility
(A20304-102)
|
Phenotype in ornamental plants
|
| ID |
Species |
Construct |
Date |
Comment |
Phenotype |
Photo |
| ID295 |
Chrysanthemum |
35S:AtCDS-SRDX |
2006-08-04 |
|
no phenotype |
|
|
| Comment |
|
