fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT3G60030 (SPL12)

Alias SPL12
TF Classification
FioreDBSBP (Click to show phylogenetic tree)
RARTFSBP
AtTFDBSBP
PlnTFDBSBP (v3.0), SBP (v1.0)
DATFSBP
TAIR short description squamosa promoter-binding protein-like 12 (.1)
TAIR annotation squamosa promoter-binding protein-like 12 (SPL12); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter binding protein-like 1 (TAIR:AT2G47070.1); Has 969 Blast hits to 908 proteins in 50 species: Archae - 0; Bacteria - 2; Metazoa - 21; Fungi - 0; Plants - 938; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT3G60030.1 49
Entry clone (w/o stop) IE_07C08_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 46872: other binding ->metal ion binding
(C) 5634: nucleus ->nucleus
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other metabolic processes ->regulation of transcription, DNA-templated
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 2 2
soybean 2 2
rice 1 1
sorghum 1 1
physcomitrella
Total 2 4 6
Repression motif 
DDDAHRLTLNLGGNNI at 95/927 in AT3G60030.1
Repression motif
in putative orthologs		 
DQETGGLSLKLGGQRD at 117/1002 in poplar Pt039458 (Type II)
DRETGGLSLKLGGERD at 117/1004 in poplar Pt016591 (Type II)
NDGAGSLNLNLGGQVY at 96/953 in soybean Gm024422 (Type II)
NEEGGTLSLKLVSGST at 116/936 in soybean Gm002653 (Type II)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
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