fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT3G61230 (PLIM2c)

Alias PLIM2c
TF Classification
FioreDBLIM (Click to show phylogenetic tree)
RARTFLIM-domain
AtTFDB
PlnTFDBLIM (v3.0), LIM (v1.0)
DATFLIM
TAIR short description PLIM2c, GATA type zinc finger transcription factor family protein (.1)
TAIR annotation GATA type zinc finger transcription factor family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: GATA type zinc finger transcription factor family protein (TAIR:AT2G45800.1); Has 5500 Blast hits to 3584 proteins in 170 species: Archae - 0; Bacteria - 0; Metazoa - 4540; Fungi - 25; Plants - 547; Viruses - 0; Other Eukaryotes - 388 (source: NCBI BLink). (.1)
Gene model
Gene model cDNA support
AT3G61230.1 8
Entry clone (w/o stop) RE_02D10
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(C) 15629: other intracellular components ->actin cytoskeleton
(F) 46872: other binding ->metal ion binding
(F) 51015: other binding ->actin filament binding
(P) 51017: other cellular processes ->actin filament bundle assembly
(C) 5737: other cytoplasmic components ->cytoplasm
(C) 5856: other intracellular components ->cytoskeleton
miRNA/tasiRNA
Orthologs
Type
Ia Ib II III Total
poplar 2 9 11
soybean 1 2 21 24
rice 1 1 3 5
sorghum 1 1 3 5
physcomitrella 1 2 3
Total 3 7 38 48
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

          

           ID
           Species
           Construct
           Date
           Comment
           Phenotype
           Photo
          

          

           ID559
           Torenia
           35S:AtCDS-SRDX
           2007-07-06
           flower bulk, 1 of 7 lines 
           not entirely opened flower 
[Publication link]		
           
          

         

         

          Comment