fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT4G12620 (ORC1B, ATORC1B, UNE13)

Alias ORC1B, ATORC1B, UNE13
TF Classification
FioreDB
RARTFAlfin-like
AtTFDB
PlnTFDBPHD (v3.0), PHD (v1.0)
DATFPHD
TAIR short description UNFERTILIZED EMBRYO SAC 13, origin of replication complex 1B (.1)
TAIR annotation Origin Recognition Complex subunit 1b. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with ORC2 and ORC5. Highly expressed in proliferating cells. Expression levels are independent of light regime. (.1)
Gene model
Gene model cDNA support
AT4G12620.1 5
Entry clone (w/o stop) IE_05C09_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(F) 10385: DNA or RNA binding ->double-stranded methylated DNA binding
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3682: other binding ->chromatin binding
(F) 46872: other binding ->metal ion binding
(F) 5515: protein binding ->protein binding
(F) 5524: other binding ->ATP binding
(C) 5634: nucleus ->nucleus
(P) 6260: DNA or RNA metabolism ->DNA replication
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
(C) 808: other intracellular components ->origin recognition complex
(P) 9567: other biological processes ->double fertilization forming a zygote and endosperm
miRNA/tasiRNA
Repression motif 

       

       

        Repression motif
in putative orthologs		
        
        

       

       

        Status
        
         

          
Plasmid construction -> done

          
Plasmid construction -> done

          
Transformed -> done

          
T1 seed harvested -> done

          
T2 seed harvested -> done

         

        		
       

       

        CRES-T phenotype from individual project
        
        

         dwarf (04838), 
         abnormal seedling (04838), 
         meristem-less (04838)
        		
       

       

        CRES-T phenotype from publication
        

        
       


       

        CRES-T phenotype from bulk project
        

        
       

       

        Phenotype in ornamental plants


        
         

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