| Alias |
ATTCX2 |
| TF Classification |
| FioreDB | CPP (Click to show phylogenetic tree) |
| RARTF | CPP(ZN) |
| AtTFDB | CPP |
| PlnTFDB | CPP (v3.0), CPP (v1.0) |
| DATF | CPP |
|
| TAIR short description |
TESMIN/TSO1-like CXC 2 (.1) |
| TAIR annotation |
TESMIN/TSO1-like CXC 2 (TCX2); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Tesmin/TSO1-like, CXC (InterPro:IPR005172); BEST Arabidopsis thaliana protein match is: Tesmin/TSO1-like CXC domain-containing protein (TAIR:AT3G22780.1); Has 1250 Blast hits to 741 proteins in 97 species: Archae - 0; Bacteria - 6; Metazoa - 464; Fungi - 8; Plants - 353; Viruses - 0; Other Eukaryotes - 419 (source: NCBI BLink). (.1) |
| Gene model |
|
| Entry clone (w/o stop) |
IE_07C04_x |
| External link |
|
| Gene Ontology (GO) |
| (F) 3700: transcription factor activity |
->transcription factor activity, sequence-specific DNA binding |
| (F) 43565: DNA or RNA binding |
->sequence-specific DNA binding |
| (C) 5634: nucleus |
->nucleus |
| (P) 6355: other metabolic processes |
->regulation of transcription, DNA-templated |
|
| miRNA/tasiRNA |
| Target sequence |
miRNA/tasiRNA sequence |
Map |
5'--3'
|
| miR5640: 3'-CTTAGATTAAGGAAGAGAGTA-5' |
|
 |
|
| Orthologs |
|
Type |
| Ia |
Ib |
II |
III |
Total |
| poplar |
|
1 |
|
|
1 |
| soybean |
|
1 |
|
|
1 |
| rice |
|
1 |
|
|
1 |
| sorghum |
|
1 |
|
|
1 |
| physcomitrella |
|
|
|
|
|
| Total |
|
4 |
|
|
4 |
|
| Repression motif |
|
Repression motif
in putative orthologs |
|
| Status |
| Plasmid construction | -> not_yet |
| Plasmid construction | -> not_yet |
| Transformed | -> not_yet |
| T1 seed harvested | -> not_yet |
| T2 seed harvested | -> not_yet |
|
| CRES-T phenotype from individual project
|
|
| CRES-T phenotype from publication |
|
| CRES-T phenotype from bulk project |
|
Phenotype in ornamental plants
|
|
| Comment |
|
