fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT4G18880 (AT-HSFA4A ,HSF A4A)

Alias AT-HSFA4A ,HSF A4A
TF Classification
FioreDBHSF (Click to show phylogenetic tree)
RARTFHSF
AtTFDBHSF
PlnTFDBHSF (v3.0), HSF (v1.0)
DATFHSF
TAIR short description ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1)
TAIR annotation member of Heat Stress Transcription Factor (Hsf) family (.1)
Gene model
Gene model cDNA support
AT4G18880.1 24
Entry clone (w/o stop) RE_0954_x
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10200: other biological processes ->response to chitin
(P) 302: response to stress ->response to reactive oxygen species
(F) 3677: DNA or RNA binding ->DNA binding
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 42803: protein binding ->protein homodimerization activity
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(P) 45893: transcription,DNA-dependent ->positive regulation of transcription, DNA-templated
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(C) 5737: other cytoplasmic components ->cytoplasm
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 6355: other cellular processes ->regulation of transcription, DNA-templated
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miR829: 3'-TAAGGTAGTAAACCATAGTCTCGA-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 1 2
soybean 1 3 4
rice
sorghum 1 1
physcomitrella
Total 2 1 4 7
Repression motif 
VLEKPGLALNLSPCVP at 191/401 in AT4G18880.1
Repression motif
in putative orthologs		 
VMPKPGLALNLMPQLE at 191/407 in poplar Pt018230 (Type II)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> not_yet
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
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