fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

>>AT4G24540 (AGL24)

Alias AGL24
TF Classification
FioreDBMADS (Click to show phylogenetic tree)
RARTFMADS / SHORT VEGETATIVE PHASE
AtTFDBMADS / TypeII
PlnTFDBMADS (v3.0), MADS (v1.0)
DATFMADS
TAIR short description AGAMOUS-like 24 (.1)
TAIR annotation Encodes a MADS-box protein involved in flowering. Regulates the expression of SOC1 and is also upregulated by SOC1. Binds with IMK3 kinase domain. Phosphorylated by IMK3; likely to be a target for IMK3 kinase domain. (.1)
Gene model
Gene model cDNA support
AT4G24540.1 10
Entry clone (w/o stop) RE_1288
External link
General info TAIR DATA
Genomic seq TAIR seq viewer
SNP SALK SNP Viewer
T-DNA tag line T-DNA Express
miRNA Search ASRP
Phylogeny SALAD database
Promoter ppdb
Microarray data
FioreDB
ATTED-II ATTED-II data
NCBI GEO NCBI GEO profile
NASC NASCarray_SpotHistory NASCarray_DigitalNorthern
Genevestigator Genevestigator
eFP Browser Developmental Map Abiotic Stress
AtGenExpress Development Hormone Abiotic Stress Light Pathogen
Gene Ontology (GO)
(P) 10076: other biological processes ->maintenance of floral meristem identity
(P) 10077: other biological processes ->maintenance of inflorescence meristem identity
(P) 10220: response to abiotic or biotic stimulus ->positive regulation of vernalization response
(P) 10582: developmental processes ->floral meristem determinacy
(P) 30154: other cellular processes ->cell differentiation
(F) 3700: transcription factor activity ->transcription factor activity, sequence-specific DNA binding
(F) 42803: protein binding ->protein homodimerization activity
(F) 43565: DNA or RNA binding ->sequence-specific DNA binding
(P) 45893: other metabolic processes ->positive regulation of transcription, DNA-templated
(P) 45944: other metabolic processes ->positive regulation of transcription from RNA polymerase II promoter
(F) 46982: protein binding ->protein heterodimerization activity
(P) 48438: developmental processes ->floral whorl development
(P) 48510: other biological processes ->regulation of timing of transition from vegetative to reproductive phase
(F) 5515: protein binding ->protein binding
(C) 5634: nucleus ->nucleus
(C) 5737: other cytoplasmic components ->cytoplasm
(P) 60: transport ->protein import into nucleus, translocation
(P) 6351: transcription,DNA-dependent ->transcription, DNA-templated
(P) 9739: other biological processes ->response to gibberellin
(F) 977: nucleic acid binding ->RNA polymerase II regulatory region sequence-specific DNA binding
miRNA/tasiRNA
Target sequence miRNA/tasiRNA sequence Map
5'--3'

miRN145: 3'-TTTTCAATTCCTAGATTAAAA-5'
Orthologs
Type
Ia Ib II III Total
poplar 1 2 3
soybean 1 8 9
rice 1 1 2
sorghum
physcomitrella
Total 3 11 14
Repression motif 
DDSDTSLKLGLPSWE at 210/220 in AT4G24540.1
Repression motif
in putative orthologs		 
KAEQPSLDLNLEHSKY at 83/228 in rice Os009970 (Type III)
DGSDVSLKLGLPCGAW at 217/228 in rice Os009970 (Type III)
RMEQPSLELQLVENSN at 83/227 in soybean Gm000403 (Type II)
ESSDTSLKLGLPYSG at 218/227 in soybean Gm000403 (Type II)
RMEQPSLELQLVENSN at 83/227 in soybean Gm002993 (Type III)
ESSDTSLKLGLPYSG at 218/227 in soybean Gm002993 (Type III)
KLDKPSLELQLEASNS at 83/234 in soybean Gm014645 (Type III)
GSSDISLTLGLPFSN at 225/234 in soybean Gm014645 (Type III)
GGSDTSLKLGLP at 199/205 in soybean Gm020470 (Type III)
GGSDTSLKLGLP at 198/204 in soybean Gm020472 (Type III)
GGSDTSLKLGLP at 198/204 in soybean Gm020471 (Type III)
RMEQPSLELQLVENSN at 83/171 in soybean Gm002994 (Type III)
DGSDISLKLGLP at 217/223 in rice Os024136 (Type II)
RMEQPSLELQLVENSN at 83/203 in soybean Gm002995 (Type III)
ESSDTSLKLGLPYSG at 194/203 in soybean Gm002995 (Type III)
KLEQPSLELQLVEDST at 83/227 in poplar Pt036867 (Type II)
ESSDTSLKLGLPFSN at 218/227 in poplar Pt036867 (Type II)
KLDKPSLELQLEASNS at 83/234 in soybean Gm014646 (Type III)
GSSDISLTLGLPFSN at 225/234 in soybean Gm014646 (Type III)
Status
Plasmid construction -> done
Plasmid construction -> done
Transformed -> done
T1 seed harvested -> done
T2 seed harvested -> not_yet
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
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