fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
>>AT4G31270
Alias
TF Classification
FioreDB
Trihelix
(Click to show phylogenetic tree)
RARTF
Trihelix
AtTFDB
PlnTFDB
DATF
TAIR short description
sequence-specific DNA binding transcription factors (.1)
TAIR annotation
sequence-specific DNA binding transcription factors; BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G33550.1); Has 462 Blast hits to 461 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 2; Plants - 436; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). (.1)
Gene model
Gene model
cDNA support
AT4G31270.1
9
Entry clone (w/o stop)
IE_03A09
External link
General info
TAIR DATA
Genomic seq
TAIR seq viewer
SNP
SALK SNP Viewer
T-DNA tag line
T-DNA Express
miRNA
Search ASRP
Phylogeny
SALAD database
Promoter
ppdb
Microarray data
FioreDB
ATTED-II
ATTED-II data
NCBI GEO
NCBI GEO profile
NASC
NASCarray_SpotHistory
NASCarray_DigitalNorthern
Genevestigator
Genevestigator
eFP Browser
Developmental Map
Abiotic Stress
AtGenExpress
Development
Hormone
Abiotic Stress
Light
Pathogen
Gene Ontology (GO)
(C) 123: other intracellular components
->histone acetyltransferase complex
(P) 31935: other cellular processes
->regulation of chromatin silencing
(F) 3677: DNA or RNA binding
->DNA binding
(F) 3700: transcription factor activity
->transcription factor activity, sequence-specific DNA binding
(F) 5515: protein binding
->protein binding
(C) 5634: nucleus
->nucleus
(P) 6355: other cellular processes
->regulation of transcription, DNA-templated
(P) 80111: DNA or RNA metabolism
->DNA demethylation
(C) 9506: other cellular components
->plasmodesma
miRNA/tasiRNA
Orthologs
Type
Ia
Ib
II
III
Total
poplar
1
1
soybean
1
1
rice
sorghum
physcomitrella
Total
2
2
Repression motif
Repression motif
in putative orthologs
EENEE
TLTLKL
QVLAV at 247/315 in soybean
Gm039816
(Type Ib)
Status
Plasmid construction
-> done
Plasmid construction
-> done
Transformed
-> done
T1 seed harvested
-> done
T2 seed harvested
-> done
CRES-T phenotype from individual project
CRES-T phenotype from publication
CRES-T phenotype from bulk project
Phenotype in ornamental plants
Comment